Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0480 ATGGGGAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCGGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTAGCTGGTCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATCAATTACCTGAGGCCTGATTTGAAGAGGGGAGCATTCTCACAGCAAGAAGAGAACTCTATAATTGAACTTCACGCGGTCCTTGGTAACAGGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTCAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCCTCTCTGAGGTTGAGAATGACAAGGACAAGCCACTCACATCTGACAAAAGCAACCAGAAAGAAGTGAGTCTTGTTGAGCCACCAAAACCGAAGCCAATGGAGAGATATCCCCTTGAAGTTTCTTCTTACTCCAAGATCAGCAGTGGCAACAACAGCAGTGGCACCCCACCCACCCTTGACAGGTTTGGCACCTGCCATGACAGCTCCATCACTAGTTCTGACATGATGGGAATGGGATATTTCCCTATCCAGCACCTCAACTATGGACCAAACATGGGACTCACTGCCAGCACCAACACCCCACTTTGCTTCATACCAAGTTGTTCCACTTCTTCCCAAATGATGTCGGAGCTGAACTCCACCATGCTCCATTCTGTGTTCCCAACTCCTGTAAAGCCCACTGTCAATAATCCTTCTTCCATATCCATATCCTCTGGGGACAATGTTGACGGGGTTCAGAGCTGGGAAAACAGCACCATCAGTAATAGTAACCATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATAGCAGCACAATAACATGGGGGTTGCAGGCAGAATCTGCCAAGGCAGCAGATAAAGATGCTCATTCTCATGTTGTACCCTTGCCATCAGaacaagaagaaattaaatggTCTGAGTATCTCAACACTCCTTTCTTTCTGGGAACCACAGTGCAGCATCAAACCACAAACTCTATCTACGGTGATGAGGTTAAGCCAGAAAGTGGCTTCATTGCAGACGAATCAAGTACTAGTTGGCACCACAGCCAGCATTTTCAACCTTCGGATATATATACCAAAGACCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1263 0.4632 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTSDKSNQKEVSLVEPPKPKPMERYPLEVSSYSKISSGNNSSGTPPTLDRFGTCHDSSITSSDMMGMGYFPIQHLNYGPNMGLTASTNTPLCFIPSCSTSSQMMSELNSTMLHSVFPTPVKPTVNNPSSISISSGDNVDGVQSWENSTISNSNHASKSNGSSSCSIQLQSSTNFLDSSTITWGLQAESAKAADKDAHSHVVPLPSEQEEIKWSEYLNTPFFLGTTVQHQTTNSIYGDEVKPESGFIADESSTSWHHSQHFQPSDIYTKDLQRFSVAFGQTL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0480 420 Gene3D - 11 67 - -
Ssu4g0480 420 SMART sant 66 114 IPR001005 -
Ssu4g0480 420 SMART sant 13 63 IPR001005 -
Ssu4g0480 420 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu4g0480 420 MobiDBLite consensus disorder prediction 119 164 - -
Ssu4g0480 420 CDD SANT 17 61 IPR001005 -
Ssu4g0480 420 Gene3D - 68 149 - -
Ssu4g0480 420 MobiDBLite consensus disorder prediction 172 191 - -
Ssu4g0480 420 PANTHER MYB DOMAIN PROTEIN 55 1 413 - -
Ssu4g0480 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ssu4g0480 420 MobiDBLite consensus disorder prediction 129 144 - -
Ssu4g0480 420 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu4g0480 420 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g0480 420 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g0480 420 PANTHER HOMEODOMAIN-RELATED 1 413 - -
Ssu4g0480 420 CDD SANT 69 109 IPR001005 -
Ssu4g0480 420 MobiDBLite consensus disorder prediction 265 301 - -
Ssu4g0480 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu4g0480 420 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0480 Ssu-Chr4 7653911 7655482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0480 1 420 MYB Transcription Factor Family AT1G09540 47.619 2.61e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g0480 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0480 K09422 - gmx:100788976 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0480 4 7653911 7655482 Ssu4g0510 4 8061122 8062593 ECH
Ssu4g0480 4 7653911 7655482 Ssu7g1849 7 37252045 37253549 ECH
Ssu4g0480 4 7653911 7655482 Ssu4g0480 4 7653911 7655482 ECH
Ssu4g0480 4 7653911 7655482 Ssu7g1849 7 37252045 37253549 PCT