Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0479 ATGTCCCTGCATGAGTTATACCGCGTGGCTAAAGGGAAACTTGATCCTAAAGAGATGAATAACACATGTGCAGCTGATCAATCTTCCGCACCCAACAAGGATTTGTTTGAGCTGGTTTGGGAAAAGGGCCAGATTTCAGTGCAGGGTCAGTCCAGCAGAGCTAGAAAGAGCCCAAATTGTAGGAGTTTGCCATCTCACAGTCCCAGGGAGGAATTAGGATATGCTAATAATAATGCTACCAATACAAGCATGGGGAAGTATGGGAATTTAGGTGCTGAATTGGATTTAagtgaagaggaagaggaagacatGGTGATGCCTTGGTTGAATTATGGAATGGATGGCCCTTTGCAACATGGATATGGTTCTGATTTTTTCCATGAACTATCTGGGGTCACCATGAATATGAATGAGCTCTCagcatcaaataatttttctttactagATAGAAGAAATAATTGTAATAAGGTATTTAGGGACACTCACAAACACACTTCATTTGCATCTGTTAGATCCAAGGTAGCAGATTTAGCTGAAAATAATGCAAATAGTGCAACCCAACATGAAACCACTCAGATTCCCCCATCTGCCTCAAGTGGTTTTTCTAGCTTAAAGATGGAGAGGCAAGGTCCTGTTATGTCTTGCAACAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATTGTCAAAGCTAATCTTCAGAACATTGGCTTGACATCAAGATCAGGAAGGGTgggaataaagaaaaaaggtgcTGCTGCAACTGTAAGCAATCCTGTTGAATCAAGAAAAGTTGAATTAAGTGGAGAGTGTCCAAAAAACTCAGCCACACAGAGTCATCAGGTTTTGGAGCCTTCCAAGGTTGTTTGGAAACCGTTGGAGCCAAAACCTCTTGAGCAGGATGGTGCTGCTTCCACAAAGTGTGACCCTTCTTGCAAAGAAGATGTGTCCAGGATTGATCAAACTTCAAATCAAGTTGTTGGTGAAAAAAGTGGGAATAAAGGACAGGAAGCTGTTGAAAGAAGTGTGGAGCCAGCTGTGGTCTCTTCCTCTGTTTGCTCTGGCAATGGCGCAGAGAGGGGTTCGGACGAcccaaatcaaaatttgaagcgAAAAAGTAGAGACACTGAGGACTTTGAGTGCCAAAGTGAAGATGTTGAGGAAGAATCAGTAGGTGTCAAAAAGGAAGTACCTGCACGACATGTTGGCTCCAAGAGAAGCCGTTCAGCCGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGAGCATTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCTTTGTTGGATGAGGCGATCGAGTATCTTAAAACACTGCAGCTGCAGCTTCAAATTATGTCAATGGGAACTGGTTTATATATGCCAGCAATGATGTTACCTGCGGGAATGCAGCACATGCATGCACCACAAATGGGTCCTTTTTCACCTATGGGTGTTGGCATGCAAATGAGGTTAGGAGCGGGTTGTGGAATGGGCATGCCTGATGCTAATAATGATGTGTCTTCTAGATTTCCAATGATTCAAGTACCCCAAATGCAAGGAACTCAACTTCCCATTGCACATACATCTGGATCCACTGTTTTACATGGGATGGCAAGACCAAATGCTCAGGTGTTTGGGCATCCTAGTCAGGGTCACCCAATGCCAATTCCACATGCtcccatattttcttttccagGAGAAACTCTTATGAATCCATCAACTTTAGGACTAAATGCCTGTGGAACAGTAGGACTTATGGAAACTGGGGACACGGCTTCAGCCTCTAGCTTAAAGGATCCAATGCCACATGTGAACTCACAAGTTGTACAAAACACCAACGGTTGTAACTCAACAAATCAGACATCAACACAGTGTGAAGCAACAATTGGTGGATTTGAACACTCAACTTCGGTACTTAATAGTGGTCATGCCTCTTTGGCAAATGACAGAGGAGCTATTAATCCCGCTAAAGAAGATAACCTTCTGATTGATAAATCTAGAAAGTATCACTAG 2061 0.4095 MSLHELYRVAKGKLDPKEMNNTCAADQSSAPNKDLFELVWEKGQISVQGQSSRARKSPNCRSLPSHSPREELGYANNNATNTSMGKYGNLGAELDLSEEEEEDMVMPWLNYGMDGPLQHGYGSDFFHELSGVTMNMNELSASNNFSLLDRRNNCNKVFRDTHKHTSFASVRSKVADLAENNANSATQHETTQIPPSASSGFSSLKMERQGPVMSCNSSTMMNFSHFAKPAAIVKANLQNIGLTSRSGRVGIKKKGAAATVSNPVESRKVELSGECPKNSATQSHQVLEPSKVVWKPLEPKPLEQDGAASTKCDPSCKEDVSRIDQTSNQVVGEKSGNKGQEAVERSVEPAVVSSSVCSGNGAERGSDDPNQNLKRKSRDTEDFECQSEDVEEESVGVKKEVPARHVGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASLLDEAIEYLKTLQLQLQIMSMGTGLYMPAMMLPAGMQHMHAPQMGPFSPMGVGMQMRLGAGCGMGMPDANNDVSSRFPMIQVPQMQGTQLPIAHTSGSTVLHGMARPNAQVFGHPSQGHPMPIPHAPIFSFPGETLMNPSTLGLNACGTVGLMETGDTASASSLKDPMPHVNSQVVQNTNGCNSTNQTSTQCEATIGGFEHSTSVLNSGHASLANDRGAINPAKEDNLLIDKSRKYH 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0479 686 MobiDBLite consensus disorder prediction 391 425 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 368 383 - -
Ssu4g0479 686 PANTHER TRANSCRIPTION FACTOR PIF3 1 639 - -
Ssu4g0479 686 Gene3D - 407 469 IPR036638 GO:0046983
Ssu4g0479 686 Pfam Helix-loop-helix DNA-binding domain 416 462 IPR011598 GO:0046983
Ssu4g0479 686 PANTHER TRANSCRIPTION FACTOR PIF3 1 639 IPR044273 GO:0003700|GO:0006355
Ssu4g0479 686 Coils Coil 373 393 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 47 86 - -
Ssu4g0479 686 CDD bHLH_AtPIF_like 412 474 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 351 367 - -
Ssu4g0479 686 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 412 461 IPR011598 GO:0046983
Ssu4g0479 686 SMART finulus 418 467 IPR011598 GO:0046983
Ssu4g0479 686 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 409 472 IPR036638 GO:0046983
Ssu4g0479 686 MobiDBLite consensus disorder prediction 181 205 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 71 86 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 250 425 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 321 335 - -
Ssu4g0479 686 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0479 Ssu-Chr4 7634309 7638636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0479 1 552 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.806 1.26e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g0479 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0479 K12126 - gmx:102659557 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0479 4 7634309 7638636 Ssu4g0479 4 7634309 7638636 ECH