Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0476 ATGGACTATCGATGGACCAGTGGTAGGCAGGAAACTGGTGGCCGTGACAGGAGGCAATCTACAAGGGAACAGGCATATCAGGACTCTCTTATTGAAGATTTGTCGGAGGATTTTCGTTTGCCAATTAACCACAGGCCAACAGAAAATGTTGATCTGGACAATGTTGAGCAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGCTTtaagcttctccaaaagatGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAGCCAATAAAATCTGGGATTAGAGATCCAAGGCTGGGGGTTGGtaagcaagaagaagatgattTCTTTACTGCAGAAGAAAATATCCAGCGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGCAGTCGGGACGATAGGCAAAAGAGAGAACAGCAGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAACAAGAGTCTGGATCAGCAACAGTTTCCTCTGTATCTAGAACTGCTACTGCTCTTACAGATCAGGAGCAGCGAAATACATTGAAGTTTGGGTTTTCTTCTAAAGGCAGTGCTTCCAAGATTACATTTGGTGccaagaagcaaaatgttgcaAAGAAACCAAATGTTTCGATGTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA 915 0.3945 MDYRWTSGRQETGGRDRRQSTREQAYQDSLIEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSATVSSVSRTATALTDQEQRNTLKFGFSSKGSASKITFGAKKQNVAKKPNVSMSSIFSNDSDEE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0476 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Ssu4g0476 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Ssu4g0476 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Ssu4g0476 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
Ssu4g0476 304 SUPERFAMILY beta-beta-alpha zinc fingers 149 189 IPR036236 -
Ssu4g0476 304 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g0476 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Ssu4g0476 304 MobiDBLite consensus disorder prediction 9 23 - -
Ssu4g0476 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
Ssu4g0476 304 MobiDBLite consensus disorder prediction 282 304 - -
Ssu4g0476 304 MobiDBLite consensus disorder prediction 192 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0476 Ssu-Chr4 7560923 7563690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0476 1 304 C2H2 Transcription Factor Family AT5G26610 63.844 1.57e-126 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0476 - - gmx:100793206 528.48