Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0473 ATGAATTATCAACGTTTTGCAAGCCATCATGACAAAATGGATGGTGATTCAAAAAAGAAGGAGGGATTGATTTTGAACATAGTGATCATGGTGGTATCCTTGATTGTTATTGCAATGGTCACCATTTCTGTTGTTGCCAACAGAGACGACCAAGGGACTGTGAAGTCTCTTCTCTCTGTTTGCACAAAAACGGAGGAACCAGAAAGTTGCTTCCGTTTCTTGAAACACGTAGGTGAGAGAGCCACGGTTTTGAATTATGTGAAAGCTGCTATTAATGCAACCCTCACAGAATTGCTGGTGGTGATTAGGCCAAAACCTCGTCTTGAGAAGAGCCTCACGCCTCTGCAGCGACAGTCATATATAGATTGTTTGGAACTGTTGAGTTTGGGAAAGGAAGAACTAAAATCTTTGTATGTGATGGCAAATTCTTATGTTGAGTTGTGCAAACTAAACCCAGATGATGTGATCAACGGCCTAAGTGCTGTCATATCGTACCAACACACTTGTTCTGATGAATTAATGAGAAGAAATAGCTATGAAGTTTTGGGGTATTCCTTGAAAGTTCCAATTCTTCTTACAAGGATAACCTTAGccattgttaataatttctGTGAGAGGCCTCCTAGAATTGACGCCCAACGGCTAGATGGATTTCCAGGATGGGTCTCGGCAACAGGGCGCAGAATGATAGAGTCTCAAGGAGACGGTAGTCGGCAATGGCCAAAAAATGTAGTTGTGGCTCAAGATGGTAGTGGCCATTTCTCAACCATAGCTGACTCACTCAATGCATGCCCAAAGAATAAGAGTGCATGTATTATTTACGTGAAAAAGGGTAGATATGAGGAGAGAGTGGTGATTCCTAAGGATGTAAACCAAGTGCTCATGTATGGTGATGGGCGTGCGAATACCATTGTCAATGGTATCAACGCAAGAGACCCCAAGACAGTCACAACCTCCTTTAGGGCAGCTACTTTCGTGGTAATGGGGAAAGGATTCATCTGCAAAGACATGGGTTTCACTGCCCCAGCTGATATTACGGGAGCACCAGCACTCCTTGTCCTTTCTGATCATGCAGCATTCTTCAACTGCAAAATTGATGGGGAGGAAGGAAGCTTGTTTGCAGTAGCCCAACGCCAATTCTACCGAGACTGTGAGATTCTTGGTAATGTGGACATCATCAAGGGAGACTCTGCAACTGTAATTCAGAACTCACAAATCACCGTGAAGACTCGAAATTCTTCTGATTTGGTTTTAAGGAGAAATGTCGTGAGTGCTCAATCCAGGTTAGACAAGTATCAGACAACTGGGTTTGTGATTCAAAACTGCACCATCACAGCACACGAAGAAAGCGTCAAAGCTCTTACTGCTACCACTTACCTGGGCTCCCCATATAGTGAATACTCAAGAACAACAATAATGGAATCATTTCAAGGGGATGTGATACACCCAAAAGGTTGGTGTAAATGGAGTGACAACTATGGCATTGAAACAGCAACCTTCCGCGAGTTTAATAATAGAGGGCCCAGTGCAAGAACTGACGGGAGGGTCAGGTGGTATGGCTACAATACAATTTTTCAGAGAGGCCAAATGGTTAGTTACACAGCTGGTCGGTTTATCCAAGCAGACCAATGGTTGCCTAGTACAAGCATTCCATACGAACCTGGGTTTGTTGTGCAGAAATAG 1683 0.4332 MNYQRFASHHDKMDGDSKKKEGLILNIVIMVVSLIVIAMVTISVVANRDDQGTVKSLLSVCTKTEEPESCFRFLKHVGERATVLNYVKAAINATLTELLVVIRPKPRLEKSLTPLQRQSYIDCLELLSLGKEELKSLYVMANSYVELCKLNPDDVINGLSAVISYQHTCSDELMRRNSYEVLGYSLKVPILLTRITLAIVNNFCERPPRIDAQRLDGFPGWVSATGRRMIESQGDGSRQWPKNVVVAQDGSGHFSTIADSLNACPKNKSACIIYVKKGRYEERVVIPKDVNQVLMYGDGRANTIVNGINARDPKTVTTSFRAATFVVMGKGFICKDMGFTAPADITGAPALLVLSDHAAFFNCKIDGEEGSLFAVAQRQFYRDCEILGNVDIIKGDSATVIQNSQITVKTRNSSDLVLRRNVVSAQSRLDKYQTTGFVIQNCTITAHEESVKALTATTYLGSPYSEYSRTTIMESFQGDVIHPKGWCKWSDNYGIETATFREFNNRGPSARTDGRVRWYGYNTIFQRGQMVSYTAGRFIQADQWLPSTSIPYEPGFVVQK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0473 560 Gene3D - 238 556 IPR012334 -
Ssu4g0473 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 203 IPR035513 -
Ssu4g0473 560 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 15 557 - -
Ssu4g0473 560 CDD PMEI-like_3 59 203 - -
Ssu4g0473 560 Pfam Pectinesterase 243 542 IPR000070 GO:0030599|GO:0042545
Ssu4g0473 560 SUPERFAMILY Pectin lyase-like 240 554 IPR011050 -
Ssu4g0473 560 SMART PMEI_2 52 199 IPR006501 GO:0004857
Ssu4g0473 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 203 IPR035513 -
Ssu4g0473 560 Pfam Plant invertase/pectin methylesterase inhibitor 59 175 IPR006501 GO:0004857
Ssu4g0473 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 200 IPR006501 GO:0004857
Ssu4g0473 560 PANTHER PECTINESTERASE 15 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0473 Ssu-Chr4 7539867 7541869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0473 14 558 Carbohydrate Esterase AT3G05610 33.562 1.11e-90 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0473 K01051 - gmx:102665007 860.522