Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0471 ATGGGCGGAGATGGAGCGACGGCGAACGCGGAGGCGCAGTACGCGACGGCGAAGATATCGGTGTGGTGGGACATCGAGAACTGCCACGTGCCGAAGGGTTCGGATCCGCACGCGATCGCACAGAACATCAGTTCCGCGCTTGTTCGCATGAACTACTGCGGCCCCGTCTCCATCTCCGCCTACGGCGACACCACGCGCATCCCCGCGTCTGTACAGCACGCGCTCTCCAGCACCGGAATCTCCCTCAACCACGTCCCCGCCGGCGTGAAAGATGCAAGTGACAAGAAGATTCTTGTTGATATGCTGTTCTGGGCAGTGGACAATCCTGCACCtgctaattatttgttaatttcggGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGGATGCGGAGATATAATATTCTTCTTGCGCAACCTCAGAAAGCATCTGCACCCTTAGTTGCAGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGGCCTCCTCTGTCTAATGGTGAATCACAACAACTTGGTAATGGTAGCCTCGTATCATCTTCTGACTCCTTACAAATTCCGGTTACAAGTGCTGCTCAGATACAGCAACAGGTGGATTCCTATTCAGAAGTTCATATaggaaattcaaaatttccGAATGGAGGAAGGGGATTCGATTCTAGATATCAGGGGAAAACAAATTGGAGAAACCAGAGTCAATCAAATGGACCCAGAGCCATGAATCCACCGCCAGTTGGACTTCAAGATAATCgtaatcataataatatgaacTCTTATCGACCTGGCAACTTTAATCCAAATGTTCCTCTAAGTGGATCTGCTACAAATTATGTTCATGGCAATACTGATCAGTTATGGAGCAATAACAATAATCTACAGGGCAATCATCAAATTCCTTATTCACAGCCATTAAGACCAAACAACTTCCCATTGCAACCTCCTTTTGCACCTAATAATTCTTATACACCAAATTCCCATACTTTTGCAACTTCAATGGTACCACCTAGGACTGGTGGTCCCAATTTCACTACAGGGCCACATACCAATGTGCCAGATATTGGTAATCTTAACATTTCTGGATATACTAATAGTGCTCATAACCCACCTACTGTTCTGCAACGGAGTGGAGAGTTGAAACAGAATCCTAATAGTAATGCTCCACATCTTTTAAGatcaattgatgaaaaaaatggaCATATGGTACATAACAGTGGCACACAACAATTACACCAAGGTTATCAGCATGGCCCAGAATATCAACCTACACCGTTGGCAGCAATGGGTAATAATAATCCTCCTGGTAATGGTATGTGGGGTTCTCCAGGATGCCCTAAACCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTAAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTATGGAGATCCCAAGCACCGTAACACTGATGTTAAGAAGGCTCTTGAGAGTGCTATTGAGCAGCAGATGGTGGTGAAACAGAATTTAGGTGCTTTGCAGTTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGCGTAAATCCTTTAGGTGGTAATCCTAAGCAGCACTCAAAAGAAACATGGGACGcaattgaaaagtttttaacaaCACCTGCTGGAAGATCAGCAATAATGGCTACACAATGCAAgTATGAAGCAGGTATTGTGATAAAGAATATGTGCTTTAAAGATCTTACTTTGGGTGATGTCCTTCAGATTTTGAACATGTTGATTATCCATAAAAAATGGATTGTGCACAATCAGTCTGGTTGGCAACCACTTAACATTACTCTTCCTGAGACAAACCCTGGTTCAGGGGTTGTAGCTGGCGCATAA 1893 0.4289 MGGDGATANAEAQYATAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLVSSSDSLQIPVTSAAQIQQQVDSYSEVHIGNSKFPNGGRGFDSRYQGKTNWRNQSQSNGPRAMNPPPVGLQDNRNHNNMNSYRPGNFNPNVPLSGSATNYVHGNTDQLWSNNNNLQGNHQIPYSQPLRPNNFPLQPPFAPNNSYTPNSHTFATSMVPPRTGGPNFTTGPHTNVPDIGNLNISGYTNSAHNPPTVLQRSGELKQNPNSNAPHLLRSIDEKNGHMVHNSGTQQLHQGYQHGPEYQPTPLAAMGNNNPPGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQQMVVKQNLGALQLYVGKNDKLWKCVNPLGGNPKQHSKETWDAIEKFLTTPAGRSAIMATQCKYEAGIVIKNMCFKDLTLGDVLQILNMLIIHKKWIVHNQSGWQPLNITLPETNPGSGVVAGA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0471 630 CDD PIN_limkain_b1_N_like 18 142 - -
Ssu4g0471 630 MobiDBLite consensus disorder prediction 212 258 - -
Ssu4g0471 630 Pfam OST-HTH Associated domain 567 616 IPR025677 -
Ssu4g0471 630 Pfam NYN domain 18 154 IPR021139 GO:0004540
Ssu4g0471 630 PANTHER LIMKAIN B LKAP 2 615 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ssu4g0471 630 MobiDBLite consensus disorder prediction 228 244 - -
Ssu4g0471 630 Gene3D - 9 161 - -
Ssu4g0471 630 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0471 Ssu-Chr4 7532142 7534990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0471 8 198 C2H2 Transcription Factor Family AT5G61190 70.984 1.60e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0471 - - gmx:100794608 1225.31