Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0467 ATGGGGTCTAGTCTTAATGCTGAATTATCCAAGAAAACTCCCATTTTTGGTCTCAAGGTGTGGGAAATAATTGGAATTGCAGTTGGATTGTCTATAATAGTCATTCTTTCTGCACTCTCACTTTGCCTCACGTTAAGGAAGAAATCTAGAAAAGATAAAGACAGGATTCCCCCTAGTCAAATACCAACTGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTATCAACAAATGCATTTGCTCCTCGTGATGGAATACTTCTTACAATTCATGATAAGTCCTGTGACAAGGAATCAGGCAAAGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGGGATAGCATCAGTCACTCAGATTCATTTCATCATATAGAGAAAGATGGAGGTGGTTCATACTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACGGTTACTTACAAGCAATCTTCTTCATACCCTATAACGGCTCCTTCACCTCTATCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCCACAAACCGTTTTTCCAAAGAAAATGTCTTAGGTGAAGGTGGGTATGGAGTGGTTTATAGGGGGCAGTTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCAGAGAAAGAATTTAGCTTGGAGGTTGATGCTATTGGTCATGTCCGACACAAAAACTTGGTTCGCCTTTTGGGGTACTGCATTGAGGGAACTCACAGGATGTTAGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCACGGAGCTATGCGTCACCATGGATACCTTACCTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCCCTTGCTTATTTGCATGAAGCCATTGAGCCGAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGACGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTTATGTCACAACGCGAGTTATGGGAACTTTTGGATACGTGGCTCCTGAATATGCAAATACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGATCCAGTTGACTATGCTCGTCCAGCAAATGAAGTGAATCTGGTTGATTGGCTGAAGATGATGGTTGGAAACAGAAGATCAGGAGAAGTGGTGGACCCCAACATTGAGGTGAAGCCATCCACCAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGACCCAAGATGGGCCAGGTTATTCGTATGCTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACAGAAGAAGAAATCGAGGGGGTAGTGGAGAAATCGAATCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCATGATTccagagaagaaagaagagggTGA 1530 0.4255 MGSSLNAELSKKTPIFGLKVWEIIGIAVGLSIIVILSALSLCLTLRKKSRKDKDRIPPSQIPTVSKEIKEVRVEQVSTNAFAPRDGILLTIHDKSCDKESGKVMVHLGVGKMKNGDSISHSDSFHHIEKDGGGSYSQSGEEGSSGTVTYKQSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFSLEVDAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYARPANEVNLVDWLKMMVGNRRSGEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVIRMLESEEYPLPREDRRHRRRNRGGSGEIESQKEYSDTDRSEIHDSREERRG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0467 509 SUPERFAMILY Protein kinase-like (PK-like) 174 469 IPR011009 -
Ssu4g0467 509 Gene3D Transferase(Phosphotransferase) domain 1 266 476 - -
Ssu4g0467 509 CDD STKc_IRAK 196 462 - -
Ssu4g0467 509 PANTHER OS01G0323000 PROTEIN 3 507 - -
Ssu4g0467 509 Gene3D Phosphorylase Kinase; domain 1 172 265 - -
Ssu4g0467 509 Pfam Protein kinase domain 191 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0467 509 MobiDBLite consensus disorder prediction 129 151 - -
Ssu4g0467 509 MobiDBLite consensus disorder prediction 461 509 - -
Ssu4g0467 509 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524
Ssu4g0467 509 ProSiteProfiles Protein kinase domain profile. 190 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0467 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Ssu4g0467 509 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 507 - -
Ssu4g0467 509 MobiDBLite consensus disorder prediction 136 151 - -
Ssu4g0467 509 SMART serkin_6 190 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0467 Ssu-Chr4 7479809 7483617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0467 167 464 Trihelix Transcription Factor Family AT1G70460 49.505 3.86e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu4g0467 Pkinase 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0467 - - gmx:100787014 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0467 4 7479809 7483617 Ssu6g2833 6 65689499 65701195 PCT
Ssu7g1828 7 36907378 36911520 Ssu4g0467 4 7479809 7483617 PCT