Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0461 ATGGCGTCGGTTGGTGTGGCACCAACATCAGGCATGAGAGAATCCAGTGGTGTTGATAGATTGCCAGAGGAGATGAATGATATGAAAATTAGGGATGATAAAGAAATGGAAGCCACGGTGGTTCATGGTAATGAAACGGAGACAGGACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAGCGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAGTTCTTCAAGACAAGAGTTAATCGAGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATTTATTAGTTAATCCACATACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGAAGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACATTTGGTCAGTTGGTTGTGTATTGGCTGAACTTCTGCTTGGACAGcCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGAACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCTAACTATACGGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGATCCAAACACTCGCTTGCCAAATGGTCGTTTTCTTCCACCATTGTTCAATTTCAAATCTCAtgAACTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCGGAGCATGCGAGGAAGCAGTGTCCGTTTCTTGGCTTGTGA 1080 0.4194 MASVGVAPTSGMRESSGVDRLPEEMNDMKIRDDKEMEATVVHGNETETGHIIVTTIGGRNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKFFKTRVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKEEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPVEILVKLIPEHARKQCPFLGL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0461 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Ssu4g0461 359 SMART serkin_6 69 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0461 359 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g0461 359 Pfam Protein kinase domain 118 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0461 359 Gene3D Phosphorylase Kinase; domain 1 44 107 - -
Ssu4g0461 359 Gene3D Transferase(Phosphotransferase) domain 1 108 351 - -
Ssu4g0461 359 SUPERFAMILY Protein kinase-like (PK-like) 69 313 IPR011009 -
Ssu4g0461 359 CDD STKc_GSK3 64 310 IPR039192 -
Ssu4g0461 359 ProSiteProfiles Protein kinase domain profile. 1 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0461 359 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Ssu4g0461 359 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 104 357 - -
Ssu4g0461 359 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 104 - -
Ssu4g0461 359 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 104 357 - -
Ssu4g0461 359 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0461 Ssu-Chr4 7428367 7432019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0461 75 310 Core Cell Cycle Gene Families AT2G38620 35.714 1.21e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu4g0461 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0461 K00924 - gmx:100795659 690.263