Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0453 ATGGCTGCTGGTCTCGTTCCGTTCTTTTTAATGGTTCTTGTGCAATTGGCCTATGCAGGGATGAATATTACTTCAAAGCTTGCAATACAATCTGGCATGAACCCTCTTATCCTTGTTGCTTATCGACAACTCTTTGCGACTGTGGCCATTGCTCCCTTTGCTTATTGGTTAGaatgGAATACACTTCCCAGGATGACAAAGCCTCTTATGCTTCGGATATTAATATCCTCCGTGACAGGAGTTACAGGAAATCAGATTCTATTTTTTGTCGGGCTAAAATATTCAACAGCTACAATTGCATGTGCACTGACCAATTTGCTCCCAGCTTTCACTTTTGTCCTTGCATTCATCTTCAGACAAGAGAAATTGAAAATCAGGAAGAGGGCTGGCTTAGCAAAGGTATTCGGGACAACATTGTGTGTGAGTGGAGCCTTGCTTTTGTCATTTTACCATGGAAAAACCATTGGTTTAGGCAAATCAAGTATTCACTGGAGATATGCAGAGGAAATGGAAGGAACTAGCTCTTCTGGCAAAGCAAGCATGCTTATAGGCCCTTTAGCCTTAATTGGTAGCACCCTTATTTGGGCAGCATGGTTCATAATTCAAACAGACATAAGCAAGAAGTTTCCAGCTCCTTACACGAGCACAGGCTTAATGTGTTTCTTGGCAAGCTTTCAATGCGTGGTCATTGCCTTGTGTTTTGACCACAGCGCCTCAGCTTGGTCACTCCACAATCCTATGAGACTTTCCTCTGCTCTTTATGCGGGAATAATTTGCACTGGGTTAGCGTATTGCCTCATGTCATGGACCATTGAGAGAAAAGGCCCTCTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACTGCCATTTTAAGCTGGGCTTTGCTTAGGGAGAAATTATACGTTGGAACtGCCATTGGGTCTCTCTTGATAGTTTTGGGGCTCTATTCTGTTCTCTGGGGAAAGAGTGAAGAGGTGAATGAGAAAGATGGTACTGAAGTGACGGTTAAAGAAGCAACCAAAGATAATGAGAAGGATCCGAAGAATGACATGGAATTGCAATCCTATGTGCCATCCAAGGGTAATCATCGTGTTATTACTTGA 1110 0.4288 MAAGLVPFFLMVLVQLAYAGMNITSKLAIQSGMNPLILVAYRQLFATVAIAPFAYWLEWNTLPRMTKPLMLRILISSVTGVTGNQILFFVGLKYSTATIACALTNLLPAFTFVLAFIFRQEKLKIRKRAGLAKVFGTTLCVSGALLLSFYHGKTIGLGKSSIHWRYAEEMEGTSSSGKASMLIGPLALIGSTLIWAAWFIIQTDISKKFPAPYTSTGLMCFLASFQCVVIALCFDHSASAWSLHNPMRLSSALYAGIICTGLAYCLMSWTIERKGPLYVSVFTPLQLVLTAILSWALLREKLYVGTAIGSLLIVLGLYSVLWGKSEEVNEKDGTEVTVKEATKDNEKDPKNDMELQSYVPSKGNHRVIT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0453 369 PANTHER WAT1-RELATED PROTEIN 8 345 - -
Ssu4g0453 369 Pfam EamA-like transporter family 8 147 IPR000620 GO:0016020|GO:0016021
Ssu4g0453 369 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Ssu4g0453 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 325 - -
Ssu4g0453 369 MobiDBLite consensus disorder prediction 332 369 - -
Ssu4g0453 369 MobiDBLite consensus disorder prediction 332 353 - -
Ssu4g0453 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 140 - -
Ssu4g0453 369 PANTHER WAT1-RELATED PROTEIN 8 345 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0453 Ssu-Chr4 7365688 7369290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0453 3 364 Nodulin-like Gene Family AT1G09380 56.749 2.36e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0453 - - gmx:100801512 613.609