Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0442 ATGGCGTCTTTGCACTCAAACGTCGATTCAGCCACGTCGTTGCAACAATCCAATCACAAGAAGCGCCGCAAAGTCACACACCACACTTCCCTCACTCTCCTTCCATGGACTTCCCAAACCGAGCACCGCATCTACTCCTCCAACCTCCTCCACGCTCTCCGCCGCAACCGTCCGCCGCCGTCCGCGCCTCTCGCCGGCCGCGAAGTCCGCGCCTCCGCCGACCGAGTCCTCGCCGTCGCGGCGAAAGGCCGCACTCGGTGGAGCCGCGCGATTCTCGCGAGTCCGCTCGGCCGGTGGAAGCAGAGGCAGCACAAGAAGGTGAAGAAATCCGCCAACGGAGCGATGAAGAAGAGCACGCCGGAGATTCGGAGAAGGTTGCCGGCGGTGCAGAACAAAGCGCGCGTTCTCGGACGGTTAATTCCCGGTTGCCGGAACGTGTCGTTCCCGAAGCTTCTAGAAGAAGCCGTCGACTATATTTCAGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCGCCGACCTAATCTCCGGTGGTGCGCCGCCGCCCGCTCCGCTCCGTTTGAGTTGA 570 0.6211 MASLHSNVDSATSLQQSNHKKRRKVTHHTSLTLLPWTSQTEHRIYSSNLLHALRRNRPPPSAPLAGREVRASADRVLAVAAKGRTRWSRAILASPLGRWKQRQHKKVKKSANGAMKKSTPEIRRRLPAVQNKARVLGRLIPGCRNVSFPKLLEEAVDYISALEMQVRAMTALADLISGGAPPPAPLRLS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0442 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 179 IPR036638 GO:0046983
Ssu4g0442 189 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 14 183 IPR044660 GO:0006355
Ssu4g0442 189 CDD bHLH_AtIBH1_like 123 173 IPR044549 GO:0006355
Ssu4g0442 189 PANTHER TRANSCRIPTION FACTOR BHLH150 14 183 - -
Ssu4g0442 189 MobiDBLite consensus disorder prediction 1 15 - -
Ssu4g0442 189 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0442 Ssu-Chr4 7241788 7242357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0442 32 169 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 47.651 2.52e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0442 - - gmx:100813766 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0442 4 7241788 7242357 Ssu7g1798 7 36529416 36530008 PCT