Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0438 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGCCTTGTGTAGAGGATGTAGTTAGAGTTGGGAACGCGAGCGTTTCAGCTGCTACTACTCCTGAAATGCGTCTAGGATCAGCGGCTAGTTGTTATCTTCAGCTAGAAGCTCCTGAACAGAATGTATCCGAGTCAGACATGTCGGATCGGATGATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATGTAGAATGCCAAAAGGTTGGAGCACCACCGGAACTGGCATCCCTTCTTGAAGAAATAGGCCGAGAGAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGATGGTCCTGAACTCGACCAGTTCATgGAAACATACTGCGAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACTTTGTTTTTGGGTAACATGGAATCACAACTCAGCAACCTTTGTAATGGAACGCTAACAAAGTCATCGGATAACAACCGCTCGGATGAGGTAGCTAGTGGGGCATCAGAGGAGGAATTAAGTTGTGGGGAGATGGAAGCAATTGAAGATCATGTATCTTCTGTAACTTGCCCAGGCGACCAAAAGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGGTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAGGGATGCAAGGATAGCACTCATGGACTGGTGGAACACCCATAATAGATGGCCATATCCTACGgaggaggagaaggtgaAGTTATCAGAAATTACTGGACTCGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGATATGCAATTTACCGTTATGGGCAGGGTAAGTGGTGGCAGTGGCAGTGGCATAAGAGGACCTATgtttttttag 942 0.4437 MEAVYRLKPLLPCVEDVVRVGNASVSAATTPEMRLGSAASCYLQLEAPEQNVSESDMSDRMIKIQIANHPLYPDLLSAYVECQKVGAPPELASLLEEIGRESHRMNARREIGDGPELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLTKSSDNNRSDEVASGASEEELSCGEMEAIEDHVSSVTCPGDQKLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPRDARIALMDWWNTHNRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTEDMQFTVMGRVSGGSGSGIRGPMFF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0438 313 SMART KNOX1_2 60 104 IPR005540 GO:0003677|GO:0005634
Ssu4g0438 313 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
Ssu4g0438 313 CDD homeodomain 227 287 IPR001356 GO:0003677
Ssu4g0438 313 MobiDBLite consensus disorder prediction 160 181 - -
Ssu4g0438 313 Pfam ELK domain 205 225 IPR005539 GO:0003677
Ssu4g0438 313 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 297 - -
Ssu4g0438 313 Pfam KNOX1 domain 62 103 IPR005540 GO:0003677|GO:0005634
Ssu4g0438 313 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
Ssu4g0438 313 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Ssu4g0438 313 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Ssu4g0438 313 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Ssu4g0438 313 SMART ELK_2 204 225 IPR005539 GO:0003677
Ssu4g0438 313 SMART HOX_1 226 291 IPR001356 GO:0003677
Ssu4g0438 313 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Ssu4g0438 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 297 - -
Ssu4g0438 313 SUPERFAMILY Homeodomain-like 226 298 IPR009057 -
Ssu4g0438 313 Gene3D - 222 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0438 Ssu-Chr4 7120352 7130222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0438 47 301 Homeobox Transcription Factor Family AT1G23380 54.023 1.21e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu4g0438 KNOX2 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0438 - - gmx:100814830 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0438 4 7120352 7130222 Ssu7g1790 7 36381005 36384208 PCT