Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0435 ATGGTTGAACCTAGTACTCTAATTCCCTTATCAtccacttcttcttcttcttcttcctctgaTGACAACACCTTTTGTACCACCATTTCCTCCTCCCACCAGAAACCAACACCTTCAAAGAAGAGACATGGTAGGCCTTTAGGTTCTAAGAACAAGCCAAAACCACCCCTTATGATTAACCAAGGCAGAGAGCAATCCTTAAAACCTATTTTCATTGAAGTCCCTAACAACTCTGATGTGATTGAGGCAGTTGTCCAATTTGCTCGTCGCTATCAAGTTAGCATCACATTGCTAAGCGCATCGGGTTCTATTTTAAGCGCAACTCTTCGCCGTATTCATTCTCATACTTCTGCTTTCACTGTTTATGGGCCTTTCACTTTAATTTCCCTCGTTGGAACCTACATAAATAACAACTCTATtgcttcttcttcatctttatcATTAACATCATCCAGTGTTGACCTTCGTTGTTCTTTTaggatttctttttcttcaatttcagGTCAAAGCTTTATTGGAGTTGTCGGAGGGAAGGTTGTGGCAGCTAATAAGGTTACTTTAGTAGTTAATACTTTCAAGAACTTTGAGATTCACAAGGATGGTATCGATGATGGTGGTGAGGAAAGGGATAACAATAACCTTAATGCATGTGATCTAGGCGGCAATCTGAATATATCTAGGttcaattaa 690 0.3551 MVEPSTLIPLSSTSSSSSSSDDNTFCTTISSSHQKPTPSKKRHGRPLGSKNKPKPPLMINQGREQSLKPIFIEVPNNSDVIEAVVQFARRYQVSITLLSASGSILSATLRRIHSHTSAFTVYGPFTLISLVGTYINNNSIASSSSLSLTSSSVDLRCSFRISFSSISGQSFIGVVGGKVVAANKVTLVVNTFKNFEIHKDGIDDGGEERDNNNLNACDLGGNLNISRFN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0435 229 MobiDBLite consensus disorder prediction 1 35 - -
Ssu4g0435 229 ProSiteProfiles PPC domain profile profile. 64 198 IPR005175 -
Ssu4g0435 229 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 214 IPR014476 GO:0003680
Ssu4g0435 229 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 193 IPR005175 -
Ssu4g0435 229 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 214 - -
Ssu4g0435 229 Gene3D - 67 208 - -
Ssu4g0435 229 CDD DUF296 68 139 IPR005175 -
Ssu4g0435 229 MobiDBLite consensus disorder prediction 1 60 - -
Ssu4g0435 229 SUPERFAMILY AF0104/ALDC/Ptd012-like 65 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0435 Ssu-Chr4 7088737 7089426 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0435 40 199 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.716 3.32e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0435 - - aprc:113857474 169.474