Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0433 ATGGTTGAACCTGGTACCTTAATTCCCCTATCATctacctcttcttcttcctttgatGACAACACCCTTCGTACTGCTATTTCCTCCTCCCACAAGAAACCAACACCTTCAAAGAAGACACGTGGTAGGCCCCTAGGCTCTAAGAACAAGCCAAAACCACCCCTTATGATTAACCAAGGCAGTGAGCAATCCCTAAAACCTGTTTTCATTGAAGTCCCTAACAACTTTGATGTGATTGAGGCAATTGTCCAATTTGCTCGTCGCTACCAAGTTAGCGTCACATTGCTAAGCGCATCGGGTTCTATTTTAAGCGCTACTCTTCGCCACACTCATTCTCATACTTCTGCTTTCACTGTTTATGGACCTTTCACTTTAATTTCCCTCACTGGAACCTACATAAATAGCAATTCTTTTGCTTCTTCATCCTTatcatcaacatcatccaaTGTTGACCTTCGTTGTTCTTTTAGGATAtccttttcttcaattttaggTCAAAGCTTTATTGGAGTTGTCGGAGGGAAGGTTGTGGCAGCTAATAAGGTTACTGTGGTAGCTAATATTTTCAAGAACTTTGAGATTCACAAGGATGGTATCAATGATGGTGGTGAGGAAAAGGATAACAATAACCTTAATGCATGTGATCTAGGTGGTAGTCTGAACATCTCTAGGttcaattaa 681 0.3759 MVEPGTLIPLSSTSSSSFDDNTLRTAISSSHKKPTPSKKTRGRPLGSKNKPKPPLMINQGSEQSLKPVFIEVPNNFDVIEAIVQFARRYQVSVTLLSASGSILSATLRHTHSHTSAFTVYGPFTLISLTGTYINSNSFASSSLSSTSSNVDLRCSFRISFSSILGQSFIGVVGGKVVAANKVTVVANIFKNFEIHKDGINDGGEEKDNNNLNACDLGGSLNISRFN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0433 226 Gene3D - 65 204 - -
Ssu4g0433 226 SUPERFAMILY AF0104/ALDC/Ptd012-like 63 194 - -
Ssu4g0433 226 CDD DUF296 66 178 IPR005175 -
Ssu4g0433 226 MobiDBLite consensus disorder prediction 7 33 - -
Ssu4g0433 226 MobiDBLite consensus disorder prediction 1 59 - -
Ssu4g0433 226 Pfam Plants and Prokaryotes Conserved (PCC) domain 66 190 IPR005175 -
Ssu4g0433 226 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 212 IPR014476 GO:0003680
Ssu4g0433 226 ProSiteProfiles PPC domain profile profile. 62 195 IPR005175 -
Ssu4g0433 226 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 22 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0433 Ssu-Chr4 7068888 7069568 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0433 10 196 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.921 6.81e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0433 - - gmx:100790942 189.504