Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0426 ATGGTATCAAAAAGTCAATCTCGTCAGAGGCACGAAGGCAGTGGCAAAGTTCCAATTCAGGAGGAAAAGCGGAGCCATGGTGATACAAAACAAGCATCAACCAGTGGCCTTAGAAATGTGATCAACGCGCTAGGGATGAGTGACCACGCTTCCTATTTGGAAACGCTTCTGCGAAGAGTGGTAAGAGAGGTGGTGGAACAAAAATTCCAGGGCCAGGCTCATCTATTTTCAAGAAAAAGGGTTAATGAGGCTGGCATATCCGGAGCCAAACCCTTAAAGTTGTGTTTTGTTAATAAGTTGCCTGATACAATTTTTACTCGGTCTAATATAATAGCAGAAGACGAATCACCCCTTCAAATTGTTCTATTTGATGTTACATCTCAGTCTGTAGTAAATGATGGTCCTCTTTCCTCACTAAAGATAGAGATCTGTGTCTTGGATGGTGAGTTCGGATCTCATGGCAGTGAGGAGTGGACTGAAGATGAGTTCAATTCCAATATCTTACGTGAAAGAGATGGTAGAGAGCCACTGTTGATTGGTGAGAGGTTTATTACTCTGAAAAATGGAGTTGGTTGTATCACTAAAATAGCCTTCTCTGACAACTCGAGATGGCAAAGAAGCAGAAGGTTCAGGATTGGAGCCAAAGTTGTGCAACCAACTTCCAATGGAGAAAAGATTCGGGAAGGTAGAAGTGAACCTTTTGTGGTCAAAGATAACAGAGGAGAGTCCTACAAGAAGCACTACCCTCCATCCTTGAATGATGAATTATGGCGTTTGAAGCAAATTGCTAAGGAAGGAAAAATCCACAAGCAGCTCTCTTTACATGGAATTCACAACGTGAAGGATCTCTTGCGGTTGTACATAACCAACGAATCTTCATTATATGAAATGTTTGGAAACATTCCAAAAAGGTCATGGTTAGACATCACTGAACATGCCAAAGCTTGTGTGATAGATGATTACAAGCTTTACAGCTATTACTCAGAAGAACTGCAAACAGGCCTGCTATTCAATTCCATCTACATCCTTGTGGGAGTGACATTTGATTGGCAAAATTATTATTCACCAGATTCTCTCACCCCAAGAGAAAAGCATTTGGTGGAAATAGTGAAGCGGCAAGCTTACAAAAATGTGaacaatttgaaattgattgaCGACACTAAATTGAACTGTTTAAATCTGGCGGCATGTCTAAAAGCAAGGCAGTCTGTCACTTCAGATCAAGGTCTGCAACATATTAATATCTCAACTGCACAAGGTCAACCAGTAACTTTGCCAGGTTGTAGTCAACCATCTACCTCTGCTTCATATACTGATGAAGGAATGCATGACCAACAAGTTTATGCTGATCCACTGCCAAGCATAAGAGAAATGCCACAAAACAGTCATGTGTTAGATGAATTTTCCTCTGAAATGTACACTGAAGGGGATGGTTGGCACCTTAATGGATCGCATTTTCCATTCGTGCAAGGTGGTTATTCAACAGAGAATGAAGGCTCAGAGATTCAATTCATAGATGGTTGTCCTCCTTATACAACATGGGAACCAGAAACTGGCTTTTTCTTTGGTTCTCCTCTTGGAGCAGAAATTAGTGCTATGCAAATATCAAGTAGTGGGAAACCCAAAGCAGTGTGGTATAAGATACGTGTTGCTCTCAAATGGGTCATATCAGCGAAAAGGGATGCAGCTGCCAGAAAGAATGCCCATCTGTTTTACTATAAGTAA 1725 0.4093 MVSKSQSRQRHEGSGKVPIQEEKRSHGDTKQASTSGLRNVINALGMSDHASYLETLLRRVVREVVEQKFQGQAHLFSRKRVNEAGISGAKPLKLCFVNKLPDTIFTRSNIIAEDESPLQIVLFDVTSQSVVNDGPLSSLKIEICVLDGEFGSHGSEEWTEDEFNSNILRERDGREPLLIGERFITLKNGVGCITKIAFSDNSRWQRSRRFRIGAKVVQPTSNGEKIREGRSEPFVVKDNRGESYKKHYPPSLNDELWRLKQIAKEGKIHKQLSLHGIHNVKDLLRLYITNESSLYEMFGNIPKRSWLDITEHAKACVIDDYKLYSYYSEELQTGLLFNSIYILVGVTFDWQNYYSPDSLTPREKHLVEIVKRQAYKNVNNLKLIDDTKLNCLNLAACLKARQSVTSDQGLQHINISTAQGQPVTLPGCSQPSTSASYTDEGMHDQQVYADPLPSIREMPQNSHVLDEFSSEMYTEGDGWHLNGSHFPFVQGGYSTENEGSEIQFIDGCPPYTTWEPETGFFFGSPLGAEISAMQISSSGKPKAVWYKIRVALKWVISAKRDAAARKNAHLFYYK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0426 574 MobiDBLite consensus disorder prediction 1 36 - -
Ssu4g0426 574 MobiDBLite consensus disorder prediction 9 29 - -
Ssu4g0426 574 Pfam Calmodulin binding protein central domain 251 316 IPR046830 -
Ssu4g0426 574 PANTHER CALMODULIN-BINDING PROTEIN 1 572 - -
Ssu4g0426 574 PANTHER OS02G0177800 PROTEIN 1 572 IPR012416 GO:0005516
Ssu4g0426 574 Pfam Calmodulin binding protein C-terminal domain 322 382 IPR046829 -
Ssu4g0426 574 Pfam Calmodulin binding protein-like N-terminal domain 92 239 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0426 Ssu-Chr4 6955251 6961313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0426 51 379 Calmodulin-binding Proteins AT5G57580 42.388 2.21e-81 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0426 - - gmx:100816427 929.858