LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g0424	ATGGCATCGAAAAGGACATATGACGAGGAGAATCATCAGGGTAATGATGACAGAGATCTTCATGTTCGTGCCAAGAGGAGAAACGCCGAcccacaacaagtggaggtcacGAACCTTTTTACCGTTTTGGAACCTCTCCTTCGAAAAGTGATGGAGGAGGTGATTCCACCTATGCTCCAGCGTTACATGTCCCCGTGTTGCCGATCATGCCTTAACCAGCGGGGTGCAACATCTGGAGGCAGAACTTTGCAATTGTGTTTCGTGAATAGATTGCCTTCAGAAATTTTCACCCTGGCCAATCTCACAGCTAAGGGCGGTGGTCCACTTCAAATTGAGCTACGTTATGCTGAATCGCAGCAACGCGTAGTCACGGAAGTAGGTTCCACCATGAAGGCTCAGATCTGTGTCCTAGATGGTGATTTTGGATTCGGTGGAAACGAGGACTGGACTGCGGAGGAATTTGATGCCCAAACAAAGGAACCAAGAGAGGGGAGGGGGCAATTACTGAAAGGAGATAAGATTATTGAACTTAAAAATGGGGTTGCTTCTATCAATCAGAATATAGTGTTTACAGATAACTCTTGCTGGACAAGAAGCAAAACGTTTCGGTTAGGAGTTAAAATAGTGCAATCTAATTCCGCTAGAGCAGACATTAGGGAAGGCAGAAGTGAATCCTTTAAGGTCAAGGACAACCGAGGAGAGTCGTACAAGAAACACGACCGTCCATCATTGACTGATAAGGTATGGCGGCTGAAGAGTATAGCAAAAGGGGGTAAGCTTCACAGGCAGCTTTCTTCGAATGGAGTAAAAACTGTCAAGGATCTTTTGCGATTGAACACAACCGGTTCATTACGGGagAAATTTGGCAACATTAATACATGGGGCAAAATAATCGCACATGCCAAAGATTGTGAACTAGACGATGATGAGTGCTATATGTATCTCGCAACGGAACAATTAACATCACTTGTCTTCAACTGCATCTATGAGGTTGTGGAGGTGAATTTTTATGGGCAAAACTGTGGCCGTCCACTGCAATCTCTGAATTTGGAGGAGAAGCGTTTGGTGGAAAGAGTTAAGCAGGAAGCATACAAAAATTTGCAGTATCTGGTGCCAATTGAGACAACACAAGATGACATAGTGAAGACTTTGACAGGTACCCTAGCGGCACCATACGGCGCTCCAGAACAAGGTCTACGACAGCCCTTCCTAATTGCTCCTCAAGATGGTAGTTTGCTAGGTTTTGATCAACTTCGCGCGTTGCGAGGAAAAGTGCCACTAAACTCGTGTGCAGGGGGGCAGGTTGTCCCCGAAGAAGCGTATGTTAATGATGCCAACGGAATCAACGGATGGGCCTTAACACAGATGGATCAATTTGATTTTGGAAGTTGCTTTACTCCTAACCACTCTAACCAATGGGAGCAACCAAATTGCGCTTTTCCCTGTGGTGAAGGAGCATCATGTAGCAATCCTTCCTTTTTCCCCAACACTGCTGTGGATATACGAAGAAGCAAAGGGAAAAGCAAGACAGTTTGGCAGAAGATTCGAAATGCTCTCAAATGGGTCATACCGCATGTGGCTAAAAGTAGGGCAAAACATCTTCGCCGTCAGTATTGA	1617	0.4477	MASKRTYDEENHQGNDDRDLHVRAKRRNADPQQVEVTNLFTVLEPLLRKVMEEVIPPMLQRYMSPCCRSCLNQRGATSGGRTLQLCFVNRLPSEIFTLANLTAKGGGPLQIELRYAESQQRVVTEVGSTMKAQICVLDGDFGFGGNEDWTAEEFDAQTKEPREGRGQLLKGDKIIELKNGVASINQNIVFTDNSCWTRSKTFRLGVKIVQSNSARADIREGRSESFKVKDNRGESYKKHDRPSLTDKVWRLKSIAKGGKLHRQLSSNGVKTVKDLLRLNTTGSLREKFGNINTWGKIIAHAKDCELDDDECYMYLATEQLTSLVFNCIYEVVEVNFYGQNCGRPLQSLNLEEKRLVERVKQEAYKNLQYLVPIETTQDDIVKTLTGTLAAPYGAPEQGLRQPFLIAPQDGSLLGFDQLRALRGKVPLNSCAGGQVVPEEAYVNDANGINGWALTQMDQFDFGSCFTPNHSNQWEQPNCAFPCGEGASCSNPSFFPNTAVDIRRSKGKSKTVWQKIRNALKWVIPHVAKSRAKHLRRQY	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g0424	538	PANTHER	OS02G0177800 PROTEIN	1	532	IPR012416	GO:0005516
	Ssu4g0424	538	Pfam	Calmodulin binding protein central domain	243	304	IPR046830	-
	Ssu4g0424	538	Pfam	Calmodulin binding protein C-terminal domain	310	371	IPR046829	-
	Ssu4g0424	538	Pfam	Calmodulin binding protein-like N-terminal domain	83	231	IPR046831	-
	Ssu4g0424	538	PANTHER	CALMODULIN-BINDING PROTEIN 60 G	1	532	-	-
	Ssu4g0424	538	MobiDBLite	consensus disorder prediction	1	21	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g0424	Ssu-Chr4	6901655	6904619	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g0424	38	373	Calmodulin-binding Proteins	AT5G26920	39.130	2.83e-70	229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g0424	-		-	gmx:100797598	531.176