Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0423 ATGGAATCAAAAAGACAATTCCAGCAAGAGAAGGATGAAAGGGGTGATCAAATTCTAGTTCACCATTCAAAGCGGAGATGTGAAGATTCACAACAATCGGAGACCTGCAGAATCAGTAGAAATTATATGTCTATACGTCACACATGGAATGACATGATGCCGCACTTGGAAGTTTCAGCTCGAAAAATTGTACGAGAGGAGTTGGAACGCAAACTATGTCCAAGACCAATTAGTAATCAAACTGAAATATCTGGAGCCAAATTCTTGCAGCTGGTTTTTAAGAATGAATTGCCTGATACAATTTTTACTTTCTCCAAGATCAAAGCTAAAGACAACACTCCTCTTGAGGTTGttctttataacattaaatctCAGTCTATATTCGCTGCTGTTGATGATCCACTGTCCTCGATCAAGATAGAGATTTGCGTCCTTAATGGTGAGTTCGGTTCAAATGGCAGTGAAGATTGGAGTGCAGATGAATTCAACGCCAAAATCTTACGTCAAAGAGACAATAAAGGGAGGTTACTGAAAGGAGATACGGTTATTACGCTTAAAAATGGAGTTGGTTATATCACCAACGTTGTGTTCACTGACAACTCAAGCTGGATGAGAAGCCGACGCTTCAGGTTAGGAGCCAGGGTTGGGCAATCAAATTTGAAAGACGCAATTAACATCAGGGAAGGTAGAAGTAAACCTTTTATCGTCAAGGATGCCAGAGGAGAGTTGAATCAGAAACACGACCCTCCATCCCTCAAGGATGAAATATGGCGTTTGaaacatatatcaaaaaatgGGAAAATTTATAAGCAGCTGTCTTCGGACGGGATAAACACCGTTGAGGATCTGTTGAAGGAGCATGAAACCAATCCATCATCTTTGAAAGAGACCTTGCATTTGATCAAAAGAAACAATTGCGTGCCTTATATGATTGTTGCTAATTATCTAATACGTGATCATACGGTTTTGCAAATTTGTTGCAGACCAACTAATAATCAGATTGGAATATCGGGAACCAAATTCTTGCAGCTGGTTTTTAAGAATGAATTGCCTGctacaatttttacttttaaaaagatCAAAGCAAAAGACGACGCTTCTGTTGAGATTGCTCTTTATGATACTAATTCTCGGTCTATAGTCGCTGATGGTTCACTGTCTTCGATCAAGGTAGAGATTTGTGTCCTTAATGGTGAGTTCGGTTCAAATGGCAGTGAAGATTGGAGTGCAGATGAATTCAGCACCAAAATCCTACGTCAAAGAGACAATAAAGGGCAGTTACTGAAAGGAGAGACGGTTATTGAACTCACAAATGGAGTTGGTTATATCACCAACGTTGAGTTCACTGACAACTCAAGCTGGATGAGAAGCCGACGCTTCAGGTTAGGAGCCAGGGTTGGGCAATCAAATTTGAAAGACGCAATTAACATCAGGGAAGGTAGAAGTAAACCTTTTATCGTCAAGGATGCCAGAGGAGAGTCGAATCAGAAGCACGACCGTCCATCCCTCAAGGATGAAATATGGCGTTTGAAACATATAtcaaaaactggaaaaatttatGAGCAGCTGTCTTTGGAGGGGATATACACTGTTGAGGATCTGCTGAAGGAGCATGAAACCAATCCATCATCTTTGAAAGAGAAATTTGGCCAGATTGGAAGAAAGCAATGGGAAGAAATTATTAAGCATGCTAAGACTTGTGTTGCTGAAGCGACATTTGACGGACAAAATTATGATTCAGAGAAGAATACTCTCAACTCCGACGAGAGGCAAGCTTACAAAAATTTGAAGGATGCAGTGCCAATTGAGACCGGAACACATGAATCAGCAAAAACATTGACACAAGCTACACAATATGGTGCTGCAAATCAAGATCTGCAGCGGCTTTACTTCCCAATTGCTCAGCAAGaAGAAATTTCTAGGCAAATGGACCCACTAAACTGGTCAGCAGAGGGGCAGTTTGTTGATGGAAACATATGGCCTGGTGATGTATCACGGATTGATCAAATTGTAGGTTGCTTTACTCCACCTGACATAAAtcctttgttctttttcaatGGTAATGAAGCAGAATGTAGCAATCATTCCTCTTTCCCCAGCTCTGCTTTGTATACATCAAacaaagggaaaagaaagatGGTTTGA 2145 0.3911 MESKRQFQQEKDERGDQILVHHSKRRCEDSQQSETCRISRNYMSIRHTWNDMMPHLEVSARKIVREELERKLCPRPISNQTEISGAKFLQLVFKNELPDTIFTFSKIKAKDNTPLEVVLYNIKSQSIFAAVDDPLSSIKIEICVLNGEFGSNGSEDWSADEFNAKILRQRDNKGRLLKGDTVITLKNGVGYITNVVFTDNSSWMRSRRFRLGARVGQSNLKDAINIREGRSKPFIVKDARGELNQKHDPPSLKDEIWRLKHISKNGKIYKQLSSDGINTVEDLLKEHETNPSSLKETLHLIKRNNCVPYMIVANYLIRDHTVLQICCRPTNNQIGISGTKFLQLVFKNELPATIFTFKKIKAKDDASVEIALYDTNSRSIVADGSLSSIKVEICVLNGEFGSNGSEDWSADEFSTKILRQRDNKGQLLKGETVIELTNGVGYITNVEFTDNSSWMRSRRFRLGARVGQSNLKDAINIREGRSKPFIVKDARGESNQKHDRPSLKDEIWRLKHISKTGKIYEQLSLEGIYTVEDLLKEHETNPSSLKEKFGQIGRKQWEEIIKHAKTCVAEATFDGQNYDSEKNTLNSDERQAYKNLKDAVPIETGTHESAKTLTQATQYGAANQDLQRLYFPIAQQEEISRQMDPLNWSAEGQFVDGNIWPGDVSRIDQIVGCFTPPDINPLFFFNGNEAECSNHSSFPSSALYTSNKGKRKMV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0423 714 Pfam Calmodulin binding protein-like N-terminal domain 89 238 IPR046831 -
Ssu4g0423 714 Pfam Calmodulin binding protein-like N-terminal domain 342 489 IPR046831 -
Ssu4g0423 714 Pfam Calmodulin binding protein central domain 502 567 IPR046830 -
Ssu4g0423 714 Pfam Calmodulin binding protein central domain 251 299 IPR046830 -
Ssu4g0423 714 PANTHER CALMODULIN-BINDING PROTEIN 327 659 - -
Ssu4g0423 714 PANTHER CALMODULIN-BINDING PROTEIN 1 307 - -
Ssu4g0423 714 PANTHER OS02G0177800 PROTEIN 327 659 IPR012416 GO:0005516
Ssu4g0423 714 PANTHER OS02G0177800 PROTEIN 1 307 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0423 Ssu-Chr4 6865569 6890035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0423 335 568 Calmodulin-binding Proteins AT5G57580 41.702 4.91e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0423 - - gmx:100798493 511.146