Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0422 ATGGATCGGGAAGGAGGAGGATCCGACGGTGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAAGGACGCCTCCTCCTCTGATATTCGCACTGCCTACCGCAAACTCGCCATGAGGTGGCACCCGGACAAGTGGGCTCGGAATCCTGCAACTGCTGGAGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTTTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGACCCTTTGGAGGAAGAAGACCAAGAGTTCTGTGATTTTATGCAAGAGATGATATCGATGATGAACAATGTGAAGGACGAGGGGGACAGTTTGGAGGACCTACAAAGGATGTTCGTGGAGATGGTGGGGGGAGATGGGATGGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTCAATGGATCAAGGGACAACGCGGCCAAGCGCAGCAACTCTCGCGCTTAG 486 0.5391 MDREGGGSDGGSCYYSVLGIRKDASSSDIRTAYRKLAMRWHPDKWARNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQEFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGGDGMGFDLNQDQTAGKRGRVNGSRDNAAKRSNSRA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0422 161 MobiDBLite consensus disorder prediction 140 161 - -
Ssu4g0422 161 CDD DnaJ 13 71 IPR001623 -
Ssu4g0422 161 Gene3D DnaJ domain 3 105 IPR036869 -
Ssu4g0422 161 PANTHER PUTATIVE, EXPRESSED-RELATED 12 148 - -
Ssu4g0422 161 PANTHER PUTATIVE, EXPRESSED-RELATED 12 148 - -
Ssu4g0422 161 SUPERFAMILY Chaperone J-domain 13 85 IPR036869 -
Ssu4g0422 161 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Ssu4g0422 161 SMART dnaj_3 12 74 IPR001623 -
Ssu4g0422 161 Pfam DnaJ domain 14 79 IPR001623 -
Ssu4g0422 161 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Ssu4g0422 161 PRINTS DnaJ domain signature 33 48 IPR001623 -
Ssu4g0422 161 PRINTS DnaJ domain signature 54 74 IPR001623 -
Ssu4g0422 161 PRINTS DnaJ domain signature 15 33 IPR001623 -
Ssu4g0422 161 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0422 Ssu-Chr4 6852439 6853478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0422 13 80 C2H2 Transcription Factor Family AT1G74250 44.928 1.17e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0422 - - gmx:548049 291.197