Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0421 ATGTCGTATCGACCTTCCACGAACGCGAGGACCGAGGTCCGTCGGAACCGGTACAAGGTCGCCGTGGACGCCGATGAAGGTCGCCGACGGCGAGAGGATACGATGGTGGAGATCCGAAAGAACCGTAGGGAAGAGAGCTTGCAGAAGAAGAGACGCGAGGGTCTCCAACCTCAGCAGCTTGCTGCATCAGTTCACTCCACAGTAATAGAGAAGAAGTTGGAACACCTACCAGCCATGGTTACAGGTGTTTGGACTGATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCGCGCTTTGTTGAGTTCTTGATGAGGGAGGATTTTCCACAGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTGTGGGCACTAGGGAATGTTGCTGGAGATTCTCCCAGATGCCGTGATCTTGTTCTCGGTCATGGAGCTTTGCTTCCTCTGTTGGCACAATTGAATGAGAATGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGACACTATCGAATTTCTGCAGGGGGAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCAGTCTTATTCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGGTGTAATTGAAGCTGGTGTTTGTAGCCGGCTTGTTGAGCTTCTATTGCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACTGGAGATGATGTGCAGACCCAGGTCATTATCAACCATCAAGCTCTTCCTTGTCTTCTGAATCTCTTGACTAGTAATTATAAGAAAAGCATCAAGAAGGAGGCATGCTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGATGTAATTGAGGCTAATATAATTGCTCCTTTAGTCCATTTGCTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACTTCGGGTGGATCTCATGAACAACTCAAGTTCTTGGTAAGTCAGGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGGCTTGAAAACATCTTGAAGGTAGGAGAAGCTGAGAAAAATGTTGGCAATACTGATGGTGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATACTGGATGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAATCAGGGTTCAACTTTGGTGGCACTGAACTTCCTGCTGTGCCGTCTGGTGGATTCAACTTTAATTAG 1599 0.454 MSYRPSTNARTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQLAASVHSTVIEKKLEHLPAMVTGVWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIEAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQVIINHQALPCLLNLLTSNYKKSIKKEACWTISNITAGNKQQIQDVIEANIIAPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQLKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNVGNTDGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWMEEEDETMPPGDASQSGFNFGGTELPAVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Ssu4g0421 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Ssu4g0421 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Ssu4g0421 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Ssu4g0421 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Ssu4g0421 532 MobiDBLite consensus disorder prediction 40 59 - -
Ssu4g0421 532 PANTHER IMPORTIN ALPHA 2 522 - -
Ssu4g0421 532 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Ssu4g0421 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Ssu4g0421 532 Gene3D - 74 497 IPR011989 -
Ssu4g0421 532 Gene3D - 13 52 IPR036975 GO:0006606
Ssu4g0421 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Ssu4g0421 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Ssu4g0421 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 106 147 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 403 443 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 149 189 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 317 358 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 275 315 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 360 400 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 190 232 IPR000225 GO:0005515
Ssu4g0421 532 SMART arm_5 234 273 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0421 Ssu-Chr4 6834420 6839858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0421 138 391 U-box Gene Family AT1G71020 20.784 8.84e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0421 K15042 - gmx:100798125 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0421 4 6834420 6839858 Ssu7g1772 7 36192341 36197635 ECH
Ssu4g0421 4 6834420 6839858 Ssu4g0421 4 6834420 6839858 ECH
Ssu6g0374 6 5933057 5936949 Ssu4g0421 4 6834420 6839858 ECH
Ssu4g0421 4 6834420 6839858 Ssu7g1772 7 36192341 36197635 PCT