Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0420 ATGGTAATGATGGATCTCAAGGAATGGTCATCTCAGGAATCGAATGAGAACAAGAAATGTTGCGCTGACTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACGCTGTGCAACGCTTGTGGAATTAGGTATCGGAAGAGAAGggcctcttcttcttcttcttcttcttcgagGAAGAGAGAGGAGGTTGTGTTGTTGGAGCGGGCATCCTCTGTTGTGAAGAGACAGAGGTGGAAGATGTTGGGGGAGGAGGAACAAGCGGCTGTGTGTTTGATGGCTTTGTCCTGTGGTTTTGTTTTCGCTTGA 324 0.4537 MVMMDLKEWSSQESNENKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRASSSSSSSSRKREEVVLLERASSVVKRQRWKMLGEEEQAAVCLMALSCGFVFA 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0420 107 Pfam GATA zinc finger 21 54 IPR000679 GO:0006355|GO:0043565
Ssu4g0420 107 ProSitePatterns GATA-type zinc finger domain. 21 46 IPR000679 GO:0006355|GO:0043565
Ssu4g0420 107 ProSiteProfiles GATA-type zinc finger domain profile. 15 74 IPR000679 GO:0006355|GO:0043565
Ssu4g0420 107 PANTHER GATA TRANSCRIPTION FACTOR 16 68 107 - -
Ssu4g0420 107 PANTHER OS01G0976800 PROTEIN 68 107 - -
Ssu4g0420 107 Gene3D - 15 85 IPR013088 GO:0006355|GO:0008270
Ssu4g0420 107 PANTHER GATA TRANSCRIPTION FACTOR 16 7 68 - -
Ssu4g0420 107 CDD ZnF_GATA 21 50 IPR000679 GO:0006355|GO:0043565
Ssu4g0420 107 PANTHER OS01G0976800 PROTEIN 7 68 - -
Ssu4g0420 107 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 14 56 - -
Ssu4g0420 107 SMART GATA_3 15 65 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0420 Ssu-Chr4 6826557 6826966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0420 5 107 C2C2-Gata Transcription Factor Family AT5G49300 52.941 2.52e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu4g0420 GATA 1.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0420 - - vra:106757446 177.948