Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0418 ATGGCAACTGAACAAGTTTTAACATTCTCTCTTGCTTCTGTGGTCGAAGATGTTCTTCAACAGCATGGTGGCCGGTTGGACGTTAACTTGGCATCAAGAAAAGCTGAAGAAGCTTCGTTGAGAAGGTATGAAGCAGCTGGTTGGCTGCGTAAGACAGTTGGAGTTGTTGGAGGGAAAGACTTGCCAGCTGAACCTTCTGAAGAAGACTTCAGGATTGGATTGCGTAGTGGAATTATCCTATGCAATGTTCTTAACAAAATTCAACCTGGATCAGTGCCCAAGGTAGTTGAAGGTCCTTGTGATTCTGTTATTATTCCTGATGGGGCAGCACTGTCTGCGTATCAATACTTTGAAAATGTGAGGAATTTTCTTGTGACTGTGGAGGAAATGGGGCTTCCAACCTTTGAAGCTTCCGATTTGGAACAGGGAGGAAAATCTTCAAGGATAGTGAATTGTGTTTTAGCGCTCAAGTCCTATGCTGAATGGAAACTTGGAGGAGGAAATGGGTCGTGGAAATATGGTGGGGTTCCGAATCAAAAGCCACCTATTTCTGGGAAAtcaattttgaggaaaaactCAGAACCATTCACGAAGTCTTTGTGGACTATGTCATCAGGGGACAGAGATGGTTATATGAGTGATCCCGGGCATGATCGAAATGAAAAGGGTTCCATTTCTTCCTTAAATTCACTGGTTCGTGAATATTTGTCTGACAAGAAGCCAGAAGAAATTCCCATTGTAGTGGAAGCCCTGCTTAGCAAAGTCATGGAAGAATTTGAACATCACATGCAAATCCAACAAGAAACGTGTAAAACAACTCAAGAAGATAAGGCACCATTCGAAACAGAATGTTCAGATTCAATTTCAGAAGCTGCTTCTGTTACTGAAATGatggaagaaaaggaagaagaacaGGACGTACAAGACAAACAAGAGGAATGTTATGAAGTGAAGTACAATGAGCCTGAAGAATCAAGCAGACAGATTATGATGTTGAAGCAGCAAAATATAGTTGAACAACAAAATAGAAGCATCAAgGAATTGAAAAGCATCGTCCATCAAACAAAATTAGGAATGCAATTTATGCAAAATGAACACCAGAAGGAGATCATTAATCTAaGTAAGCACCTGCATAGCCTAGCTTCTGCATCTTCGGGATATCATAAAGTTCTTGAAGAAAACCGCAAGCTATACAATCTAGTGCAGGATTTGAAAGGAAATATTAGGGTGTATTGTAGAGTTCGACCCTTCTTGGGTGGGCAACCAAGCCATTACAGCTCTGTCGGTAACGTGGAAGAGGGAAGTATCTCAATCATAACACCTTCCAAATACGGCAAAGAGGGGAAGAAGACATTTAATTTCAATAGAGCCTTTGGTCCTTCTGCAACCCAAGGGGAAGTTTTCTCAGACATGCAGCCTCTTATTCGTTGTGTTGTGGATGGTTACAATGTCTGCATATTTGCCTATGGCCAAACGGGTTCAGGAAAAACATTCACTATGTCTGGACCAGATGACCTTAACGAGGAAACTATAGGTGTCAACTACCGTGCGCTGAGAGATCTTTTCTATCTCTCAGAGCAGAGGAAAGACACCATTTCTTATGAGATCTCTGTTCAGATGCTTGAGATTTACAATGAGCAAGTCAGGGACCTACTAGCAACAGATGGTTCTAGCAAAAGATTAGAAATTCGCAACAGTTCCCATAATGGTATCAACGTGCCAGATGCCAACCTTGTTCCGGTTTCATGCACTTCTGATGTCATAAATTTGATGAACTTGGGGCACAAGAATCGGGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGCTCTCACAGCTGCCTAACAGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTGGTTGACCTGGCAGGAAGTGAGAGGGCTGATAAAACTGAGGCCACAGGTGATAGACTTAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTGGGTGATGTAATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCCTACAGGAACAGCAAACTTACTCAGCTTCTTCAGGATTCTCTTGGAGGGCAAGCAAAAACTCTCATGTTTGTTCATGTAAGTCCTGAGCCTGAAGCTCTTGGAGAAACACTTAGCACACTCAAGTTCGCTGAACGAGTCTCCACTGTTGAACTCGGTGCTGCGCGAGTTAATAAAGATAGTGCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTCTGAAGGCAGCCTTAGCGAGAAAGGAGGGAGGAGAAGCAGAACACTTTCAACAATCTGTCAATAGTAGTAGCCATGAAATACCCAAGTTGAAATCGAATGCATCTTCTCCTCCTATACAACGTAGTTGGACACCTGGAGCCCGTAAGTTGCCAAAAGATGATTCTAGTAGCCTGGAGGGCCAGAAAAATGCTGCATCAAAGTTGAAAAGACGAAGCCTAGATCTGCATGACATGCGTAGGAATTCACCTCCATGGCCACATGTTAGAAGTCATGCAAAGGAGGATGACAAAGAATCAATTTCTGGGGATTGGGTTGATAAGATTTCCATGAACAGGAATGACAGCTTGACCAGTGATGATAGTCTCGTGGGACAGTGGGAAGCAGAAAGCAAACAATCTTCTCCAATGTTAAGTCCCACTTATCTCTCAGAGCCTTCTAAGATATACCCGGACCACTCCTTGCATAGAAAGGACAACCAAGACTATGAAGATTTACATAGGCACGGGTTTGATATGGCCACCACAGATGAATCTGATGATCACGAGATTGCAACTAGTGATTCTTCAGAATCAGACTTGCATTGGCCATCCCATATACCTAAACCAATCACCGTTTCAAGCGGATTAGGCGCTAAAGCAAAGAAATCAACTAATCTCAGACCAGCAAAGAACCCAGAAGCCAGGAGTATGATCCCATCATTAATTCCTGTGCCGTCAAGGAAACAACCCACCCTAGGTGCTCAAGCAAGAAAAAACCCAGGATCTATTGATGGAAAGAGAAGGATTGGGAGTGCTAAGTGA 3069 0.4249 MATEQVLTFSLASVVEDVLQQHGGRLDVNLASRKAEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNVLNKIQPGSVPKVVEGPCDSVIIPDGAALSAYQYFENVRNFLVTVEEMGLPTFEASDLEQGGKSSRIVNCVLALKSYAEWKLGGGNGSWKYGGVPNQKPPISGKSILRKNSEPFTKSLWTMSSGDRDGYMSDPGHDRNEKGSISSLNSLVREYLSDKKPEEIPIVVEALLSKVMEEFEHHMQIQQETCKTTQEDKAPFETECSDSISEAASVTEMMEEKEEEQDVQDKQEECYEVKYNEPEESSRQIMMLKQQNIVEQQNRSIKELKSIVHQTKLGMQFMQNEHQKEIINLSKHLHSLASASSGYHKVLEENRKLYNLVQDLKGNIRVYCRVRPFLGGQPSHYSSVGNVEEGSISIITPSKYGKEGKKTFNFNRAFGPSATQGEVFSDMQPLIRCVVDGYNVCIFAYGQTGSGKTFTMSGPDDLNEETIGVNYRALRDLFYLSEQRKDTISYEISVQMLEIYNEQVRDLLATDGSSKRLEIRNSSHNGINVPDANLVPVSCTSDVINLMNLGHKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGSTIRGSMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVISSLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHVSPEPEALGETLSTLKFAERVSTVELGAARVNKDSADVKELKEQIASLKAALARKEGGEAEHFQQSVNSSSHEIPKLKSNASSPPIQRSWTPGARKLPKDDSSSLEGQKNAASKLKRRSLDLHDMRRNSPPWPHVRSHAKEDDKESISGDWVDKISMNRNDSLTSDDSLVGQWEAESKQSSPMLSPTYLSEPSKIYPDHSLHRKDNQDYEDLHRHGFDMATTDESDDHEIATSDSSESDLHWPSHIPKPITVSSGLGAKAKKSTNLRPAKNPEARSMIPSLIPVPSRKQPTLGAQARKNPGSIDGKRRIGSAK 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0418 1022 Gene3D Kinesin motor domain 402 775 IPR036961 -
Ssu4g0418 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 765 IPR027417 -
Ssu4g0418 1022 SMART ch_5 41 159 IPR001715 GO:0005515
Ssu4g0418 1022 ProSiteProfiles Calponin homology (CH) domain profile. 39 161 IPR001715 GO:0005515
Ssu4g0418 1022 MobiDBLite consensus disorder prediction 931 1022 - -
Ssu4g0418 1022 PRINTS Kinesin heavy chain signature 481 502 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 PRINTS Kinesin heavy chain signature 634 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 PRINTS Kinesin heavy chain signature 603 620 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 PRINTS Kinesin heavy chain signature 683 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 1003 - -
Ssu4g0418 1022 Pfam Kinesin motor domain 413 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 Coils Coil 740 767 - -
Ssu4g0418 1022 Gene3D - 32 162 IPR036872 -
Ssu4g0418 1022 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 1003 - -
Ssu4g0418 1022 MobiDBLite consensus disorder prediction 820 859 - -
Ssu4g0418 1022 CDD KISc_C_terminal 405 735 - -
Ssu4g0418 1022 ProSitePatterns Kinesin motor domain signature. 633 644 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu4g0418 1022 SMART kinesin_4 405 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 ProSiteProfiles Kinesin motor domain profile. 407 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0418 1022 Pfam Calponin homology (CH) domain 42 161 IPR001715 GO:0005515
Ssu4g0418 1022 SUPERFAMILY Calponin-homology domain, CH-domain 42 173 IPR036872 -
Ssu4g0418 1022 MobiDBLite consensus disorder prediction 766 859 - -
Ssu4g0418 1022 MobiDBLite consensus disorder prediction 771 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0418 Ssu-Chr4 6798505 6804452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0418 324 733 Calmodulin-binding Proteins AT5G65930 38.929 3.88e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0418 K10406 - gmx:100799535 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0418 4 6798505 6804452 Ssu4g0418 4 6798505 6804452 ECH
Ssu7g1976 7 39402686 39405769 Ssu4g0418 4 6798505 6804452 ECH