Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0417 ATGAGTAGGATTGAATTTTCGAGTACGAAGCCACCGCCGGTTCCACTGGGGACTCTGATTGGCCGTGAGCTTCGAAATGAAAAAGTGGAAAAACCTTTCGTGAAGTATGGACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCTGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGATCTTTGATGGGCATAACGGGATATCAGCTGCTATTTTTGCAAAGGAAAACTTgctaaataatgttttaagtgCAATACCTCTAGATATTAGCAGGGATGCTTGGCTTCAGGCTCTACCTCGTGCTCTGGTTGTTGGTTTTGTGAAGACTGACATAGAGTTTCAGCAAAAGGGGGAAACTTCTGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTATCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATTAGACACTCAGGGAGGTGTGGTTTCTCTCTTGACAGTTGATCACAGACTGGAAGAGAATGCAGAAGAGAGGGAGCGTGTTACTGCCAGTGGTGGTGAAGTGGGAAGACTCAATGTATTTGGAGGCAATGAGGTTGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTGTCTAGATCAATAGGTGACACAGACGTGGGGGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGACTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCATCTGATATGGCTGCCATGTCATGTCGGGGTCTACCTGCAGAGCTTGCTGCAAAACTAGTGGTTAAGGTGATGATTAGTTCCAGCATTCTTCCCATACTAGGAATGGATGTCCAATATTTAGtaaattctttgttttgttcttttttcccAGGAAGCTCTAAGGTCAAGAGGCCTAAAGGATGA 951 0.4374 MSRIEFSSTKPPPVPLGTLIGRELRNEKVEKPFVKYGQAGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAIFDGHNGISAAIFAKENLLNNVLSAIPLDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAMSCRGLPAELAAKLVVKVMISSSILPILGMDVQYLVNSLFCSFFPGSSKVKRPKG 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0417 316 ProSiteProfiles PPM-type phosphatase domain profile. 32 300 IPR001932 -
Ssu4g0417 316 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 284 - -
Ssu4g0417 316 PANTHER ALPHABET, ISOFORM E-RELATED 2 284 - -
Ssu4g0417 316 CDD PP2Cc 43 276 IPR001932 -
Ssu4g0417 316 Pfam Protein phosphatase 2C 63 264 IPR001932 -
Ssu4g0417 316 SMART PP2C_4 23 290 IPR001932 -
Ssu4g0417 316 Gene3D - 33 282 IPR036457 -
Ssu4g0417 316 SUPERFAMILY PP2C-like 38 278 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0417 Ssu-Chr4 6788049 6789899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0417 1 278 PP2C-type Phosphatase Gene Family AT1G09160 85.612 7.95e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0417 - - gmx:100800232 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0417 4 6788049 6789899 Ssu7g1766 7 36086766 36088892 PCT