Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0415 ATGAGAAGAAAGAGTGGGGGCAAACGTAGGCCAGCGGCATCTGCAACTGTGACTCCTCCTCCCCTCTCCGCCATTCCTCTCCTTTCGGACGAACATAACGCAATTGCGTATGATACTGAGGGTGACGATGATGTCGATTGCCTTCATCGCCGCCCCGAACCTGTGGATTTGTTGGCCAAGAGCATCTGCATATGTTGCGATAATAAAGGCGAGGAGGAAGGTGTTTTAGTTTGCAGCGAAAGGGGCTGCCCCGTCACCGTCCACGCCAACTGCATCGGTTCCGAACCTAAATTCGATGATTCCGGAAACTTCTACTGCCCCTACTGCTGGTACAAGCGCGCCACGGACACGTGTCAACAACTCAGGGAGAAAGTCCTGGTCGCAAAGAATGCTTTGTCACGCTTTTTGGATGATGACACACGTGCAGATTCTGCTGCTGCACGTGTGAACCCGGTTCAGGATAGGCAAGAATGCGCGGAGAAAGCAGAATCTGAAGAGAAAAAAGACGAAGGAAAGGTGTCTGCGTCTGTGACGGGTAGTTCTGTGAGCGAGTCGGAATCTGAGGGCGTATCAGTGAAGAAAAGGAAGGATCAGAAGAAAGTTGCTTCTGCGAAGAAGTCGTTGTTACAAAAAGAGCATGTCAGTGAAGAGAATAAAGATGAAGGAAAGGTGTCTGCGTCTGTGACGGGTAGTTCTGTGAGTGAGTCGAAATCTGAGGGCGTATCAGGGAAGAGAAGGAAGGATCAGAAGAAGGTTGCTTCTGCGAGGAAGCCGTTGTCACAACAAGAGCATAAGCAGTATAACACTAGAGGGAAAATTGCTAACGAGGAGGAAGTTACCAGCTTCCAAACTTTGAGGCAACCACAGAGGTCGCCCGCGAAAGTAATGAAGCGGACTTTACTGACCGCGAAACGTAGGAGATTACTTTGGACAGCCGAAGAAGAAAAAGTTCTGAAGGAAGGAGTATTAAAGTTCTCGACAGAAAATCAGAATATCCCTTGGaggaaaattttggaatttggTTGCCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTAGCAAGGATGTAAATAGAACCAGGGCGTGGAGATCCTTCTGA 1125 0.4773 MRRKSGGKRRPAASATVTPPPLSAIPLLSDEHNAIAYDTEGDDDVDCLHRRPEPVDLLAKSICICCDNKGEEEGVLVCSERGCPVTVHANCIGSEPKFDDSGNFYCPYCWYKRATDTCQQLREKVLVAKNALSRFLDDDTRADSAAARVNPVQDRQECAEKAESEEKKDEGKVSASVTGSSVSESESEGVSVKKRKDQKKVASAKKSLLQKEHVSEENKDEGKVSASVTGSSVSESKSEGVSGKRRKDQKKVASARKPLSQQEHKQYNTRGKIANEEEVTSFQTLRQPQRSPAKVMKRTLLTAKRRRLLWTAEEEKVLKEGVLKFSTENQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNISKDVNRTRAWRSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0415 374 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 149 364 - -
Ssu4g0415 374 SUPERFAMILY FYVE/PHD zinc finger 59 113 IPR011011 -
Ssu4g0415 374 MobiDBLite consensus disorder prediction 188 223 - -
Ssu4g0415 374 ProSitePatterns Zinc finger PHD-type signature. 63 109 IPR019786 -
Ssu4g0415 374 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 40 168 - -
Ssu4g0415 374 Gene3D - 300 365 - -
Ssu4g0415 374 Pfam Myb-like DNA-binding domain 310 360 IPR001005 -
Ssu4g0415 374 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 40 168 - -
Ssu4g0415 374 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 149 364 - -
Ssu4g0415 374 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g0415 374 Coils Coil 111 131 - -
Ssu4g0415 374 MobiDBLite consensus disorder prediction 239 258 - -
Ssu4g0415 374 SMART sant 306 364 IPR001005 -
Ssu4g0415 374 ProSiteProfiles Myb-like domain profile. 302 362 IPR001005 -
Ssu4g0415 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 146 IPR013083 -
Ssu4g0415 374 MobiDBLite consensus disorder prediction 224 238 - -
Ssu4g0415 374 CDD SANT_TRF 310 363 - -
Ssu4g0415 374 MobiDBLite consensus disorder prediction 146 268 - -
Ssu4g0415 374 MobiDBLite consensus disorder prediction 154 173 - -
Ssu4g0415 374 CDD PHD_SF 62 109 - -
Ssu4g0415 374 SUPERFAMILY Homeodomain-like 305 363 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0415 307 362 Single Myb Histone (SMH) Gene Family AT3G49850 50.877 4.51e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0415 - - vun:114169284 353.984