Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0412 ATGGGGCATTTTTCCTCAATGTTTAATGGGTTGGCACGGTCGTTTTCaatgaagaaaggaagaaaaattggGAAATGTGGAAGGAGGGAAGCTGCTGAAGCAATGGCAAAGGAAGCTAAGAAAAATGACATGATACTGTGTAGCTCCGGCATTGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTTTTCTCCAAAAAGGGCCAGAAAGGAGTGAACCAAGATTGCTGCATAGTATGGGAGGAATTTGGATGCCAAGAGGACATGATCTTCTGTGGCATTTTTGATGGGCACGGGCCATGGGGTCACTTTGTGGCCAAAAAAGTAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACACTTGCCCAAACTTCACTTGATCAAGCTGTTGATGTTGAGGACGAGAAAAGGCAGCAATACCGATTCAACATATGGAAGCACTCTTACTTGAACACTTGTGCTGCCATTGATCAAGAACTAGAGCAGTATCGCAAGATAGATTCATTTTACAGCGGAACAACTGCCCTATCAATTGTTAGACagGGTGAACTCATTGTCATAGCAAATGTTGGTGACTCTCGTGCAGTATTGGCTACAACATCAGATGATGGAAGTTTGGTACCAGTTCAACTAACAGTTGATTTCAAGCCAAATTTACCCCAGGAGGCAGAGAGAATAATTCAGTGCCAGGGGCGAGTGTTCTGCTTAGAGGACGAGCCAGGGGTGCATAGGGTGTGGTTACCGGATGAAGAGTCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGTATGGTCTTATTTCCGTGCCTGAGGTTACCCACAGAAATATAAGTAGTAGAGACCAGTTTGTCGTGCTAGCCACTGATGGGGTTTGGGATGTAGTCTCTAATAAAGAAGCAGTAGATGTTGTATCTTCAACAGCTGATAAAGCTAAGGCAGCTAAACGTTTGGTGGAGTATGCGGTGCATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGACATTTCCGCTATTTGTCTCTTCTTTCACTCTTCCCTTTCATCAGAGCAAGTTAGCCAGGTTGCCACCTTAAAATAA 1110 0.445 MGHFSSMFNGLARSFSMKKGRKIGKCGRREAAEAMAKEAKKNDMILCSSGIVHVDGSNNFASVFSKKGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKKVRESMPPSLLCNWQETLAQTSLDQAVDVEDEKRQQYRFNIWKHSYLNTCAAIDQELEQYRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATTSDDGSLVPVQLTVDFKPNLPQEAERIIQCQGRVFCLEDEPGVHRVWLPDEESPGLAMSRAFGDYCIKGYGLISVPEVTHRNISSRDQFVVLATDGVWDVVSNKEAVDVVSSTADKAKAAKRLVEYAVHAWKRKRRGIAVDDISAICLFFHSSLSSEQVSQVATLK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0412 369 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 362 - -
Ssu4g0412 369 CDD PP2Cc 59 353 IPR001932 -
Ssu4g0412 369 PANTHER ALPHABET, ISOFORM E-RELATED 1 362 - -
Ssu4g0412 369 SUPERFAMILY PP2C-like 56 354 IPR036457 -
Ssu4g0412 369 Pfam Protein phosphatase 2C 78 331 IPR001932 -
Ssu4g0412 369 Gene3D - 47 356 IPR036457 -
Ssu4g0412 369 ProSiteProfiles PPM-type phosphatase domain profile. 60 353 IPR001932 -
Ssu4g0412 369 SMART PP2C_4 51 351 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0412 Ssu-Chr4 6710976 6713057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0412 1 354 PP2C-type Phosphatase Gene Family AT3G05640 73.876 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0412 - - gmx:100808955 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0412 4 6710976 6713057 Ssu7g1752 7 35904003 35905069 PCT