Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0406 ATGCTTGCTGCCTTTCTAGTTCTCCGTCAGAACCACCACCAAAAGATGGCCATGCTTAGTTTCCTTTTCATTCTCACGCTTTTACCCTCATTTGAGGCTCTCTCAGATGAAGCCATTCCCTTAGATGAGTTTATTCCCTCAGAAATCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCCTGCATGGACGTTGAAAACCAGAACTCGTGCCTCCAAAACATCCAAAACGAGCTCACCAAAATAGGCCCTCCAAGCCCCACTTCAGTGATGAGTGCCGCACTCAAGGCCACACTCAACGAAGCCAGGGTGGCCATTGACAACATGACAAAGATCACCACGTTCTCCGTCAGTTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTGTTGGATTTCTCGGTTTCTGAGCTGGCATGGTCGTTGGGGGAGATGAGAAGAATTAGAGCAGGAGATACCAACGTGCAGTACGAGGGCAACCTCGAAGCGTGGCTGAGTGCAGCACTGAGCAACCAAGACACGTGCCTTGAAGGCTTTGAAGGCACAGACAGACGTCTCGAGAGTTACATCAGTGGAAGCTTGACACAAGTCACGCAACTTATCAGCAATGTTTTGTCCTTGTACACTCAATTGCATACCTTACCCTTCAGGCCTCCGAGGAACAACACTACTTTAACAACTGAAACTGATGGAGACTTGGAGTTTCCTGAATGGATGACCGAGGGTGATCAAGAGTTGCTTAAATCCAAGCCACATGGTGTGCGTGCTGACGCGGTTGTGGCATTGGATGGGAGTGGTCACTACCGCTCTATCACAGAAGCTGTTAATGCGGCTCCGAGTTACAGTCAAAGGAGGTACATTATTTACGTGAAAAAGGGACTTTACAAGGAGAATGTCGacatgaagaagaagatgacCAACATCATGCTCGTAGGAGATGGTATTGGCCAAACCATTATCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGAACTGCTACGCTTGCCGTATCCGGGAAGGGTTTCATTGCAAGGGACATGTCATTCCGGAACACGGCTGGGCCAGTGAATCATCAGGCCGTGGCACTGCGTGTGGATTCAGACCAATCAGCCTTCTATAGGTGCAGTGTGGAAGGGCACCAAGACACCCTTTACGCCCACTCCCTCAGACAGTTCTACCGTGAATGCGAAATCTATGGCACCATAGACTTCATATTTGGCAACGGGGCCGCAGTGCTGCAAAATTGCAAAATATACACCAGGGTCCCACTTCCGTTGCAGAAGGTTACCATAACGGCCCAAGGCAGAAAAAGCCCACATCAGAGCACTGGGTTTACGATCCAGGATAGCTATGTTCTGGCCACCCAGCCCACATACTTGGGCAGGCCCTGGAAGCAATATGCTAGGACAGTTTACATTAACACGTACATGAGTGGGCTAGTCCAGCCTCGAGGGTGGCTTGAGTGGTTTGGGAACTTCGCCTTGAACACATTGTGGTACGGTGAGTACAGGAACTATGGGCCTGGTTCATCACTAGCTGGTAGGGTCAGATGGCCCGGTTATCATGTAATTAAAGATGCCTCTACCGCTAGTTTCTTCACAGTTCAGCGGTTCATTAATGGGGACTCTTGGTTGCCGGGGACAGGTGTCAAGTTTACAGCGGCCAAGTCCATGTCATCATCAAAGAAATTTGTCTCACTACTCTCTAAATACCTTACATCTCCCTCCAAATTCTCAAAGTCCACGATGCTTGCCCTTCAAGATTGCCACCTTCTAGGAGACCTGAATAAGGACTTTTGGCGTAGAACTCTAGAAAACATCAATTCCACTAACACCCTTAGTAGCTCAGAGGCTGAAAAATTGCACACTTGGCTTAGTGCTACATTGACCAACTACGACACGTGCTTAAACAGCCTTCATGAAACCACGTCAAGCCCTGACGATGACCTACTAACCCATATTTCCAATGGAACCAAGTTTTATAGCATATCTCTAGCAATCTTCAAGCGTGGATGGGTAGACAATGCAAACACAGAGAGAAAACTTGCAGAAAGAAATGATGACATGTGGGAAAAGAAGCTGCACGGGCTTACGAGAATAAGCGGAAGAAAGGTGCTTCAGTTGGTTCCAGACAATGTTGTTGTGAGCCAAAGGGTGGTGGTGAACCCAGATGGGTCTGGAAACTACACAACTATCAATGATGCAGTTGCTGCTGCCCCAAATAACACCGGGGGTGGCAACGGGTTTTTCGTGATTCACGTGGTGGGTGGAGTGTATGAAGAGTATGTTTCTATTCGCAAATACAAGCAGTACCTGATGATGATAGGGAATGGAATTAACCAGACCATAATCACGGGTAATCGCAGCGTGGCTGATGGTTGGACTACCTTCAATTCTGCTACATTCGCCGTGGTTGCGCAGGGTTTTGTGGCAATGAACATAACATTTCGCAACGCAGCTGGAGCAATCAATCACCAAGCAGTAGCCCTCCGAAGCGGGGCAGACCTGTCTGCATTTTATAGTTGTAGCTTTGAAGGGTACCAAGACACCTTATACACTCATTCTCTTaggcaattttataaaaactgtGACATTTATGGTACGGTGGACTTCATTTTTGGTAACGCAGCAGTTGTCTTGCAAGACTGTAACATCTACCCAAGACTCCCACtgcaaaataaattcaatgccATTACCGCACAGGGCAGGACTGACATCAACCAAAACACTGGCACCTCCATACACAATTGTAGCATAACCGCAGCAAGTGACTTAGCCACTAGTAATGGCACCACAAAAACCTACCTAGGAAGACCCTGGAAGCAATATTCACGAACAGTTTATATGCAGTCTTTCATGGACAGCTTGATCGATCAAGCGGGTTGGTTAGCTTGGTCAGGGGACTTTGCTTTGGATACCCTTTATTACGCGGAATTTGATAATAACGGGCCTGGATCTAACACTTGTAATAGGGTTACTTGGCCTAGGTTTCATGTGATCAATGCCACAGATGCTGTTAATTTCACAGTTGCTAATTTCGTACAAGGAGGTGCTTGGCTGCCTTTGACTGGAaagaagaagagaatcgCCATCATTGGCGTCTCTACCTTCTTGCTGGTGGCTATGGTGGTGGCCGTCACAGTTAGCATGAACATCAATAACAAGGGATCCAGCGGTGACGACAAGGAAGGGAACAAATCCCGCGTAGCTTCTTCCATAAAAGCCGTGAAAACCCTTTGCGCACCCACAGAATACAAGAAGGAGTGCGAGGAGAGTCTGACCGCGCAGGCCGGCGACACCACGGACCCGAGAGAACTCATAAAGATCGCGTTCAACGTGACCATCGACAGAATCGGGGAGGGACTCGCGAAAACGCAACTCATGCAGGAGGCCGAGAAAGACCCCCGGACCAAGGAGGCACTCGACACGTGCAAGCAGCTCATGAACCTCTCCATCGGGGAGCTCGCGCGGTCGCTCGACAAGTTCGAGAAGTTCGACCTCAACAACCTCGACCGAGTCCTCACGAGCCTGAAGGTCTGGCTCAGCGGTGCCGTCACGTACCAAGAAACGTGCCTCGACGCCTTCGAGAACACCACGACCGAAGCCGGTCGCAAGATGCAGGGGCTCTTGCAAACCGCCATGCACATGAGTAGCAACGGCCTCGCTATCATCACCGAGCTGTCAAAAACTCTCTCGGAAATGAACATCACCAAACCCGGGCGCCGCCTCTTGGAGAACGTTGAGGACTTGCCCGTTCTCGGCCACGATGACGACGAATTTGAGCTTCCCGATTGGGTTGATGATCGCGTCGGGGTTCGCAAACTCCTTCGTACGACTGGACGGAAACTCGCCGCGCACGTCGTCGTTGCCAAGGATGGAAGTGGAAATTTCACGACCATCGGGGAGGCATTGAAGCACGTGCCCGTGAAAAACCTAAGGCCGTTCGTTATCCACGTCAAGGAGGGCGTTTACAAAGAGTACGTCGAAGTCTCCAATATTATGACCCATGTCGTTATGATTGGGGATGGTGCTAAGAAGACAATCATCACTGGAAACAAAAACTTCATTGATGGGGTTGGGACCTACAGAACCGCCAGTGCCGCCATTGCTGGAGATTTCTTCGTTGCCATAGGTATGGGGTTTGAGAATTCAGCCGGCGCTGAAAAACATCAAGCAGTGGCCTTGAGGGTTCAATCTGACAAGTCCATCTTCTATAAATGCAGAATGGATGGGTACCAAGACACACTTTACGCCCACACCATGCGTCAGTTCTACCGCGATTGCATCATTTCAGGCACCATCGACTTTGTCTTCGGTGATGCAGTGGCTGTTTTCCAAAACTGCACTTTCGTGGTTCGAAAACCATTGAAAAATCAACAATGCATTGTGACCGCACAAGGTAGGAAAGAGACAAACCAACCATCAGGTTTAATCATCCAAGGAGGGTCCATTGTGTCAGACCCCAAGTACTACCCAGTAAGGTTCGACAACAAAGCCTACTTGGCTCGTCCATGGAAGAATTACTCAAGGACTGTCTTCATGGACACCTACATTGGTGATTTGATCACACCCGATGGCTACATGCCATGGCAAACATTACAGGGTTCAACCGGAATGGACACTTGTTTCTACACTGAGTTCAACAACCGTGGCCCTGGTTCAAACAAATCCAAGCGCGTGAAATGGCAAGGAATCAAGACCCTCAACTCAGAAGGAATATCAAATTTCTTGCCATCCAAGTTCTTCCATGGAGATGACTGGATTAGGGTTACTAGGGTTCCTTACTACCCCGGCAAGGGTTCCCCCACTCATTGA 4827 0.4846 MLAAFLVLRQNHHQKMAMLSFLFILTLLPSFEALSDEAIPLDEFIPSEIQTQDMQALIAQACMDVENQNSCLQNIQNELTKIGPPSPTSVMSAALKATLNEARVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDTNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHTLPFRPPRNNTTLTTETDGDLEFPEWMTEGDQELLKSKPHGVRADAVVALDGSGHYRSITEAVNAAPSYSQRRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLATQPTYLGRPWKQYARTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGSSLAGRVRWPGYHVIKDASTASFFTVQRFINGDSWLPGTGVKFTAAKSMSSSKKFVSLLSKYLTSPSKFSKSTMLALQDCHLLGDLNKDFWRRTLENINSTNTLSSSEAEKLHTWLSATLTNYDTCLNSLHETTSSPDDDLLTHISNGTKFYSISLAIFKRGWVDNANTERKLAERNDDMWEKKLHGLTRISGRKVLQLVPDNVVVSQRVVVNPDGSGNYTTINDAVAAAPNNTGGGNGFFVIHVVGGVYEEYVSIRKYKQYLMMIGNGINQTIITGNRSVADGWTTFNSATFAVVAQGFVAMNITFRNAAGAINHQAVALRSGADLSAFYSCSFEGYQDTLYTHSLRQFYKNCDIYGTVDFIFGNAAVVLQDCNIYPRLPLQNKFNAITAQGRTDINQNTGTSIHNCSITAASDLATSNGTTKTYLGRPWKQYSRTVYMQSFMDSLIDQAGWLAWSGDFALDTLYYAEFDNNGPGSNTCNRVTWPRFHVINATDAVNFTVANFVQGGAWLPLTGKKKRIAIIGVSTFLLVAMVVAVTVSMNINNKGSSGDDKEGNKSRVASSIKAVKTLCAPTEYKKECEESLTAQAGDTTDPRELIKIAFNVTIDRIGEGLAKTQLMQEAEKDPRTKEALDTCKQLMNLSIGELARSLDKFEKFDLNNLDRVLTSLKVWLSGAVTYQETCLDAFENTTTEAGRKMQGLLQTAMHMSSNGLAIITELSKTLSEMNITKPGRRLLENVEDLPVLGHDDDEFELPDWVDDRVGVRKLLRTTGRKLAAHVVVAKDGSGNFTTIGEALKHVPVKNLRPFVIHVKEGVYKEYVEVSNIMTHVVMIGDGAKKTIITGNKNFIDGVGTYRTASAAIAGDFFVAIGMGFENSAGAEKHQAVALRVQSDKSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDAVAVFQNCTFVVRKPLKNQQCIVTAQGRKETNQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNYSRTVFMDTYIGDLITPDGYMPWQTLQGSTGMDTCFYTEFNNRGPGSNKSKRVKWQGIKTLNSEGISNFLPSKFFHGDDWIRVTRVPYYPGKGSPTH 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0406 1608 CDD PMEI-like_3 1082 1233 - -
Ssu4g0406 1608 SUPERFAMILY Pectin lyase-like 1288 1601 IPR011050 -
Ssu4g0406 1608 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 212 IPR035513 -
Ssu4g0406 1608 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 556 674 IPR035513 -
Ssu4g0406 1608 PANTHER PECTINESTERASE 561 1030 - -
Ssu4g0406 1608 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1079 1232 IPR035513 -
Ssu4g0406 1608 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 213 IPR035513 -
Ssu4g0406 1608 SUPERFAMILY Pectin lyase-like 719 1029 IPR011050 -
Ssu4g0406 1608 CDD PMEI-like_3 554 676 - -
Ssu4g0406 1608 ProSitePatterns Pectinesterase signature 2. 869 878 IPR033131 -
Ssu4g0406 1608 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 21 559 - -
Ssu4g0406 1608 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 1051 1600 - -
Ssu4g0406 1608 SMART PMEI_2 1075 1227 IPR006501 GO:0004857
Ssu4g0406 1608 SMART PMEI_2 538 671 IPR006501 GO:0004857
Ssu4g0406 1608 SMART PMEI_2 53 208 IPR006501 GO:0004857
Ssu4g0406 1608 ProSitePatterns Pectinesterase signature 2. 1434 1443 IPR033131 -
Ssu4g0406 1608 Gene3D - 716 1033 IPR012334 -
Ssu4g0406 1608 Gene3D - 253 555 IPR012334 -
Ssu4g0406 1608 Gene3D - 1284 1603 IPR012334 -
Ssu4g0406 1608 SUPERFAMILY Pectin lyase-like 255 557 IPR011050 -
Ssu4g0406 1608 ProSitePatterns Pectinesterase signature 1. 1315 1334 IPR018040 -
Ssu4g0406 1608 TIGRFAM PME_inhib: pectinesterase inhibitor domain 44 213 IPR006501 GO:0004857
Ssu4g0406 1608 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1076 1231 IPR006501 GO:0004857
Ssu4g0406 1608 Gene3D Invertase/pectin methylesterase inhibitor family protein 556 674 IPR035513 -
Ssu4g0406 1608 Gene3D Invertase/pectin methylesterase inhibitor family protein 1075 1233 IPR035513 -
Ssu4g0406 1608 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Ssu4g0406 1608 CDD PMEI-like_3 70 214 - -
Ssu4g0406 1608 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 561 1030 - -
Ssu4g0406 1608 PANTHER PECTINESTERASE 21 559 - -
Ssu4g0406 1608 PANTHER PECTINESTERASE 1051 1600 - -
Ssu4g0406 1608 Pfam Plant invertase/pectin methylesterase inhibitor 1079 1227 IPR006501 GO:0004857
Ssu4g0406 1608 Pfam Plant invertase/pectin methylesterase inhibitor 57 208 IPR006501 GO:0004857
Ssu4g0406 1608 Pfam Plant invertase/pectin methylesterase inhibitor 558 671 IPR006501 GO:0004857
Ssu4g0406 1608 Pfam Pectinesterase 1290 1589 IPR000070 GO:0030599|GO:0042545
Ssu4g0406 1608 Pfam Pectinesterase 723 1020 IPR000070 GO:0030599|GO:0042545
Ssu4g0406 1608 Pfam Pectinesterase 258 546 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0406 Ssu-Chr4 6605949 6628182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0406 23 559 Carbohydrate Esterase AT3G05620 61.861 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0406 K01051 - gmx:100810565 991.104