Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0401 ATGTTAAATGATCAGCTTTATCGCTTCCTTGTTCGGAGGACTGGCAGCAAATTCAATGCTGTGATACTCAAGCGCTTGTTCATGAGCAAGGTTAACAAGCCTCCAATTTCTTTGTCAAGGTTGATTAAGTATGCGAAGGGGAAGgaAGGTAAAATTGCTGTTGTAGTGGGGACTGTAACTGATGATATCAGGGTATATGAAGTTCCAGCATTGAAAATTACAGCACTCAGATTTACAGAGAGAGCACGTGCAAGAATTGAAAAGGCGGGCGGTGAATGCTTGACATTTGATCAACTTGCCCTTAGGGCTCCTTTGGGACAGAATACGGTCCTTCTTAGAGGCCCCAAGAATGCTCGAGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTGCCACACAGCCATACCAAGCCCTATGTACGATCTAAGGGAAGAAAGTTCGAGAGGGCTAGAGGAAGGAGGAACAGCAAAGGATTTAGGGTTTAA 486 0.4506 MLNDQLYRFLVRRTGSKFNAVILKRLFMSKVNKPPISLSRLIKYAKGKEGKIAVVVGTVTDDIRVYEVPALKITALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSKGFRV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0401 161 Pfam Ribosomal protein 60S L18 and 50S L18e 5 161 IPR021131 -
Ssu4g0401 161 SUPERFAMILY Ribosomal proteins L15p and L18e 5 113 IPR036227 -
Ssu4g0401 161 Gene3D - 2 161 - -
Ssu4g0401 161 PANTHER 60S RIBOSOMAL PROTEIN L18 5 160 IPR000039 GO:0003735|GO:0005840|GO:0006412
Ssu4g0401 161 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 5 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0401 Ssu-Chr4 6458408 6459480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0401 8 161 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.710 4.64e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0401 K02883 - gmx:100527681 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0401 4 6458408 6459480 Ssu4g0401 4 6458408 6459480 ECH
Ssu4g0401 4 6458408 6459480 Ssu7g1744 7 35809407 35811625 PCT