Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0400 atgatgatgatgacaatgGAGGGGATGATGGACAAGGGGGTGTTGGATGATGTGATAAGGAGGCTTCTGGAAGGCAAAGGAGGGAAACAGGTGCAGCTTTCTGAGTCGGAGATCCGTCAACTCTGCGTCAACGCCAGACAAATCTTCCTCTCTCAGCCAATTCTTCTTGAGCTCCGTGCTCCAGTCCGAATCTGCGGTGATATACATGGTCAGTACCAGGACTTACTGAGGCTTTTTGAATATGGTGGCTACCCTCCTGCGGCAAACTACTTGTTTCTGGGGGATTATGTGGATAGAGGGAAGCAAAGTTTGGAGACTATATGTTTGCTTTTGGCCTACAAAATAAGATATCCAGACAAAATTTATCTCTTGAGGGGAAACCATGAAGAAGCAAAGATAAACCGAATATATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTTACCGACTGCTTTAACTGTTTGCCGGTGGCTGCACTCATTGATGAGAAAATACTTTGTATGCATGGGGGACTCTCTCCAGAATTACAAAATTTAGGTCAGATAAGGGAGATTCAAAGGCCTACTGAAATTCCAGATAGTGGTCTCCTATGTGATCTGCTTTGGTCTGATCCTGATGCTACCATTGAGGGCTGGGCAGAGAGTGACCGAGGCGTTTCATGTACTTTTGGACCTGATGTAGTTACAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgttgTGGAGGATGGATACGAGTTTTTTGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCAAATTATGGTGGGGAATTTGACAATGCTGGTGCATTGTTAAGCGTTGATGATTCTCTTGTATGTTCCTTTGAGATATTGAAACCCGCTGATAGAGCATCAGGTAGTTcatcaaaaatgaattttaagaaGCCCCCGAAACTCGGAAAGATCTAG 972 0.4167 MMMMTMEGMMDKGVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLELRAPVRICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIYLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELQNLGQIREIQRPTEIPDSGLLCDLLWSDPDATIEGWAESDRGVSCTFGPDVVTEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPADRASGSSSKMNFKKPPKLGKI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0400 323 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
Ssu4g0400 323 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Ssu4g0400 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2 317 - -
Ssu4g0400 323 MobiDBLite consensus disorder prediction 304 323 - -
Ssu4g0400 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Ssu4g0400 323 SMART pp2a_7 33 303 IPR006186 GO:0016787
Ssu4g0400 323 SUPERFAMILY Metallo-dependent phosphatases 16 304 IPR029052 -
Ssu4g0400 323 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 8 2 317 - -
Ssu4g0400 323 Gene3D - 8 310 IPR029052 -
Ssu4g0400 323 CDD MPP_PP1_PPKL 14 301 - -
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Ssu4g0400 323 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0400 Ssu-Chr4 6446262 6448823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0400 62 249 Calmodulin-binding Proteins AT5G63870 32.735 2.47e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0400 K06269 - gmx:100805030 640.573