Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0398 ATGAGTCGAGGAGGTGCAGCAGGAGCGAAGGGAAAGAAGAAGGGTGTGACATTCACCATTGACTGTGCAAAGCCAGTGGAAGACAAAATCATGGACATTGCCTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAAGCTGGTGCTCTAGGTGATGCTGTTACTGTCACCCGTGAGAAGACCAATATCACTGTCACCTCTGACAGTAACTTCTCCAAACGGTATTTGAAGTACTTGACAAAGAAGTACTTGAAGAAACACAACGTGCGTGACTGGCTCAGAGTGATTGCTTCAAACAAGGATAGAAGTGTTTATGAACTGAGGTACTTCAACATTGCTGAGAAtgagggagaggaagaggattAG 375 0.4293 MSRGGAAGAKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVTREKTNITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0398 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Ssu4g0398 124 Gene3D - 6 124 IPR038526 -
Ssu4g0398 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Ssu4g0398 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0398 Ssu-Chr4 6390589 6391260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0398 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 1.06e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0398 K02891 - jre:109012705 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0398 4 6390589 6391260 Ssu7g1741 7 35769092 35770172 PCT