Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0385 ATGGGTTTTGGTTCTGAGGGTCACAGAATGATTTTCATCATTACCATATTGATGTTCCTATCATTGCAAAGAGCCAACATTTTGACTGCGGATGCTGTGTTGAATCATGCAGCAGGAAATGAAAATCAGATTAAGAAAATCTCAGGAATGGACGAGAATGAAAACAAGCAAACTCCTATAGTGGAAAACTTTAGAGCTTTGCTTGGACTCCACAGGTTCAACACAAGAAGGCCATGCTACAGCGATTCTGACTCTGACTTTGTGTCCCTCTCACCTTCTCTGCCACCCATCTCCGAAGCTGAGGCTCCGACTCCGGAGCCGCACGTGCACCCTCATTCCTATCACTCACATAGGAACATGCCACCTCGCAAGATTCAACAAGAAGATAGAGGCAGGGCAAAAAGAACAACACTAGTAGCTGTTGTAGTACCTGGTGGAGTTGCAACGTTGATTTGTGCACTTGGTTGTGTCTGCGTTTGCAAGAAATTCAGAAATCAGAAAAAGAAACCCAATAGGACAATGCCACTCTTTAGCAACAACGGAAGAACACAAGGCACTTACCAAAATTCATCAAGCAACGTGAGTCTAAAGTCTGACCCGGATCTGTTTTACCTCACTTGTTTGAAACAAACTTGCGAGACACAAAATAGCACTTCAAGTCATGGCTCCCTAAAATGTACAATTTATGAGAAGAAAGTACCACATCAATATGACAATGCTAGCACTAGCAGTTCTTCCACGAAGGAAATTCTCTCTGTTCACGAGGATTTGGAATACGATGGTAGCAAAGCTTCCTCTGGAGAAAAACTAGTCCCTGATGAATGCCATTCATCGGATAACGAAAGTTTTCATTCATGTGTTGATACACATTCATcaataagtgaaacagaaacACTGTCTCTCCCTCCTACAAATTCAATTTCTTCAACAAGCCAATTTCCTTGCTCCCCTCAGAATTCAACTTCTAAGGTAAAATCTAACCAATCACCATGCAGTCCAAAACATGAAGAGCAAAAGAAGATTGAAATTTCTCAACCTAGCATTCCTCCCCCACCATGCCCACCTCCACTTTTGAACATTAACAGTGCCAAAACCCCACCTCCTCAACTTCCTCAACAACTAGGTAAGGATGGAAGTACCCCACTGCCAAAACTGAAACCACTTCACTGGGACAAAGTAAGAGCCACGCCAGATCGAACCATGGTTTGGGATAAGCTACGAACAAGCTCGTTTGAGTTGGACGAGGAAATGATCGAATCACTTTTTGGCTACAATTTACAAAATTCAATGAAAAACGACGAAACAAAGAGCAAAAGCCTGTCTCCTAACAAgcatgtacttgagccaaaacGGTTGCAAAACATAGCAATACTCTCGAAAGCTCTAAATACCACAGCTGAACAAGTATGCGAAGCCCTGGTACTAGGGGAGGGCTTGTCCTTGCAACAACTAGAGGCACTGGTGAAAATGGTACCCACGAAGGAAGAAGAGGCCAAGCTCTTAAGCTTCAAAGGAGACGTCAATGAACTGGGGTCCGCCGAAAAGTTTGTGAGAACAATGCTTAGCATACCATTTGCCTTTCAACGACTGGAAGCCATGCTTTACAGAGAGACTTTCGAAGATGAAGTAGTTCACCTCAGTAACTCTTTTTCAACGTTAGAGAAAGCGTGCAAGGAACTAAGGTCAAGCAAGTTCTTCGTGAAATTACTCGAAGCAGTACTCAAAACAGGGAACCGCATGAACGTTGGGACAGTCAGGGGAGGTGCCAGAGCCTTCAAACTTGATGCACTTCTCAAGCTTGCTGATGTTAAAGGAACCGATGGTAAAACCACCTTGCTCCATTTCTTTGTTCAGGAGATTGTTCGCTCAGAAGGAATCAAAGCCTCAGAGAGCATCATGGGGCAGAAGAGTGAAGACGGaaaggaggaagagaaggaagaagaTTATAGAAGAAAGGGACTAGAACTTGTTTCTGGTCTGAGTGCAGAGTTATGTAACGTTAAGAAGACAGCCACAATTGACTTGGATGTTCTTGCGAGTTCTGTCTCGAACCTATCGAGTGGAATGGCTAACGTGCAGAACCTAGTAAAGGGGTTGTTGTGTGAGGATGAAAAGAGTGAGAGCTTTGTCGTTGCTATGAAGTGTTTTCTGAGTTATGCAGAAAGAAAGGCACAGGACTTGCAAGGAGATGAAAGTAGAGTCATGGCTCGTGTCAAAGAAATAACTGAGTATTTTCATGGGGATGTGAGTAAAGAAGAGTCGAATCCACTTCGAATATTTGTGATCGTGAGGGACTTTCTGGAGATGGTAGATAATGTGTGCAATGAGCTTAAAAGGTCTACGAAATCCCCTCGCACCATTCGGATAGAGTAG 2373 0.4244 MGFGSEGHRMIFIITILMFLSLQRANILTADAVLNHAAGNENQIKKISGMDENENKQTPIVENFRALLGLHRFNTRRPCYSDSDSDFVSLSPSLPPISEAEAPTPEPHVHPHSYHSHRNMPPRKIQQEDRGRAKRTTLVAVVVPGGVATLICALGCVCVCKKFRNQKKKPNRTMPLFSNNGRTQGTYQNSSSNVSLKSDPDLFYLTCLKQTCETQNSTSSHGSLKCTIYEKKVPHQYDNASTSSSSTKEILSVHEDLEYDGSKASSGEKLVPDECHSSDNESFHSCVDTHSSISETETLSLPPTNSISSTSQFPCSPQNSTSKVKSNQSPCSPKHEEQKKIEISQPSIPPPPCPPPLLNINSAKTPPPQLPQQLGKDGSTPLPKLKPLHWDKVRATPDRTMVWDKLRTSSFELDEEMIESLFGYNLQNSMKNDETKSKSLSPNKHVLEPKRLQNIAILSKALNTTAEQVCEALVLGEGLSLQQLEALVKMVPTKEEEAKLLSFKGDVNELGSAEKFVRTMLSIPFAFQRLEAMLYRETFEDEVVHLSNSFSTLEKACKELRSSKFFVKLLEAVLKTGNRMNVGTVRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIVRSEGIKASESIMGQKSEDGKEEEKEEDYRRKGLELVSGLSAELCNVKKTATIDLDVLASSVSNLSSGMANVQNLVKGLLCEDEKSESFVVAMKCFLSYAERKAQDLQGDESRVMARVKEITEYFHGDVSKEESNPLRIFVIVRDFLEMVDNVCNELKRSTKSPRTIRIE 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0385 790 MobiDBLite consensus disorder prediction 171 194 - -
Ssu4g0385 790 SMART it6_source 375 785 IPR015425 -
Ssu4g0385 790 MobiDBLite consensus disorder prediction 92 133 - -
Ssu4g0385 790 MobiDBLite consensus disorder prediction 294 386 - -
Ssu4g0385 790 ProSiteProfiles Formin homology-2 (FH2) domain profile. 375 790 IPR015425 -
Ssu4g0385 790 Gene3D Formin, FH2 domain 398 787 IPR042201 -
Ssu4g0385 790 MobiDBLite consensus disorder prediction 294 329 - -
Ssu4g0385 790 MobiDBLite consensus disorder prediction 345 362 - -
Ssu4g0385 790 PANTHER FORMIN-RELATED 35 778 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu4g0385 790 SUPERFAMILY Formin homology 2 domain (FH2 domain) 349 782 - -
Ssu4g0385 790 MobiDBLite consensus disorder prediction 170 194 - -
Ssu4g0385 790 Pfam Formin Homology 2 Domain 379 771 IPR015425 -
Ssu4g0385 790 PANTHER FORMIN-LIKE PROTEIN 35 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0385 Ssu-Chr4 6215826 6218990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0385 364 778 FH2 protein (formin) Gene Family AT3G05470 70.892 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0385 - - gmx:100805407 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0385 4 6215826 6218990 Ssu7g1731 7 35598991 35602486 PCT