Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0378 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCTCAACAGAGAATACTGGAGAAGATGCAGCTGTTAAACAGCAATTAGAGATGCTTGGCCAGCTCCATAGTCCAAATTCTAACACTTCAACTACAACAAATAATAGCAATGGGTCAAACACAAATTCACAACCACCTgttaagaagaaaaggaacctaCCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTCTGTCGCCAAACACCCTGGTGACTACAAACCGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGGCGGGGCCATAACCTGCCGTGGAAGCTCAAACTGAGAACCACCACAGAAGTTCGAAAACGGGTTTATGTTTGTCCAGAACCCTCGTGTGTCCACCACAACCCAGCTCGAGCGCTGGGCGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTCCAGTCTGACTGGAAAGCCCATTCAAAAGTTTGTGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTTTGTGATGCACTGACTGAGGAGAATAACAAATTCAACGAAGGACAATTGTCAAACATGCATGGTGGTTCAAACTTGCAACAACCAGTAATCCCAAACCTAGTTGCATCATTACCAATCAATGCCAATAATCACAAGCACCCATTACCACTCCCTCACGACCACATGACAACAATGCCCGCAAAACCCTTTAACAACCTGGCTGCATTCACGAGAAGCCTTTCATCCAGCTCTTCTCCCTCTCAACCAACCTCAGCCTCACCAAACATGTTCGAGGAAAACGGTCTCCATTCACCTCACATGTCCGCCACAGCATTGCTCCAAAAAGCTGCACAAATGGGCGCAACCGTGAATGGTAACAGCGGCATGAGCATGACTGAAAAAAGCTTTGTCACAAGCATGGCACCGCCCTCGTATGGGATCATGAACCACAACATGCACAATGGTCAACAAGACTTGTGCCACTATAATTTCAATGCGAATGGGATGGACATCGGTGGTGGCGTGGGAATGAGTGGTTTGGATATGTTTAATGTTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAATCGAAGCAGTAATGGGGTTTTGCATGCAATGAATGGTAGGTCAAGTGGTTCCATTGATGTTGCTGGTGGAAAAGGGTGTGAGGATGTGATGACTTTGGACTTGCTGGGGATAGGAGGAGTTGGTGACGGAAATTTCTATGGTGGTGATCAACAGTCAGAAATGGCTGCGAGAGATGGAATTTGGAGGAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAGCAAATGGCAGCATGTGA 1467 0.4458 MSNSNITSCDSWSFSTENTGEDAAVKQQLEMLGQLHSPNSNTSTTTNNSNGSNTNSQPPVKKKRNLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKFNEGQLSNMHGGSNLQQPVIPNLVASLPINANNHKHPLPLPHDHMTTMPAKPFNNLAAFTRSLSSSSSPSQPTSASPNMFEENGLHSPHMSATALLQKAAQMGATVNGNSGMSMTEKSFVTSMAPPSYGIMNHNMHNGQQDLCHYNFNANGMDIGGGVGMSGLDMFNVILDQSKALSKIIEQNNRSSNGVLHAMNGRSSGSIDVAGGKGCEDVMTLDLLGIGGVGDGNFYGGDQQSEMAARDGIWRNWSNKNAGLESFSAANGSM 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0378 488 MobiDBLite consensus disorder prediction 284 303 - -
Ssu4g0378 488 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Ssu4g0378 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 451 - -
Ssu4g0378 488 MobiDBLite consensus disorder prediction 1 73 - -
Ssu4g0378 488 Gene3D Classic Zinc Finger 145 224 - -
Ssu4g0378 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 10 451 - -
Ssu4g0378 488 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Ssu4g0378 488 MobiDBLite consensus disorder prediction 32 62 - -
Ssu4g0378 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Ssu4g0378 488 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g0378 488 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Ssu4g0378 488 SMART c2h2final6 166 186 IPR013087 -
Ssu4g0378 488 SMART c2h2final6 131 161 IPR013087 -
Ssu4g0378 488 SMART c2h2final6 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0378 Ssu-Chr4 6136707 6140245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0378 39 228 IDZ Gene Family AT3G50700 75.385 2.34e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g0378 zf-C2H2_jaz 7.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0378 - - gmx:100776872 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0378 4 6136707 6140245 Ssu4g0378 4 6136707 6140245 ECH
Ssu4g0378 4 6136707 6140245 Ssu7g2149 7 42295172 42298679 PCT