Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0377 ATGGAAGGAGATGACGATTATGTGGAGTATGTGCCTGTGGCCAAGCGTCGTGCCATTGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGCCTCTACTGCCACTGATGACGATTTGGAGAAACTAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCATCGCAGATGAAACGAGAACAACCTGAGATCAGTGTGACAGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGAAAAACCCTCATGTCTGTCCGTGAATTGGCTAAGGGGATTACTTATACAGAACCTTTGCTTACTGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATATCTAAGAAGGAATGTGATTTGATTCGCAAGCAGTGGCATATTATAGTTGATGGTGAAGATATACCGCCCccaattaagaattttaaggATATGAGGTTTCCAGAGCCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTATACAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCTTTCACGGGCTCTGGAAAAACTCTGGTCTTTGTGCTTCCAATGATCATGGTGGCAATGCAAGAGGAAATAATGATGCCTATTGTTCCTGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCTAGGCAGACTTACGAAGTGGTTGAACAATTCTTGTTTCCTTTGAAGGAAGCAGGATATCCAGAGCTCAGGCCTTTGCTTTGCATTGGTGGAGTGGATATGAGATCGCAGCTTGAAATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATCGATTAGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCAACCAAAATTCAGAACTTTGCCAGAAGCGCCTTGGTGAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCAGCAAATCTTGATGTAATTCAGGAAGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAACAAGGCTGATGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATTCATGGAGGCAAGGATCAAGAAGAGAGAGAGTATGCAATTGCAGCTTTCAAGGCTGGAAAGAAAGATGTGCTGGTAGCAACTGATGTTGCTTCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGACATGCCAgctgaaattgaaaattatgtcCATAGGATTGGACGGACTGGAAGATGTGGCAAGACTGGTATAGCGACAACATTTATAAACAAGAATCAAAGTGAGACAACATTACTTGATTTGAAACACCTCTTGCAAGAAGCAAAACAAAGGATTCCCCCAGTTTTGGCTGAGTTGAATGATCCAATGGAGGATAATGATGAAATCACAGACATAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATTCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1767 0.4171 MEGDDDYVEYVPVAKRRAIEAQKILQRKGKASTATDDDLEKLRVAETKPSLLVKASQMKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHVRRISKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKKLKAKGIIQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLFPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0377 588 Coils Coil 65 85 - -
Ssu4g0377 588 PANTHER BNAA06G38640D PROTEIN 8 568 - -
Ssu4g0377 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Ssu4g0377 588 ProSiteProfiles Zinc finger CCHC-type profile. 547 562 IPR001878 GO:0003676|GO:0008270
Ssu4g0377 588 SMART ultradead3 162 373 IPR014001 -
Ssu4g0377 588 Coils Coil 500 520 - -
Ssu4g0377 588 SUPERFAMILY Retrovirus zinc finger-like domains 546 567 IPR036875 GO:0003676|GO:0008270
Ssu4g0377 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 504 IPR027417 -
Ssu4g0377 588 CDD SF2_C_DEAD 370 498 - -
Ssu4g0377 588 Pfam DEAD/DEAH box helicase 167 346 IPR011545 GO:0003676|GO:0005524
Ssu4g0377 588 Pfam Helicase conserved C-terminal domain 382 489 IPR001650 -
Ssu4g0377 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 358 IPR014001 -
Ssu4g0377 588 Gene3D - 111 362 IPR027417 -
Ssu4g0377 588 SMART c2hcfinal6 546 562 IPR001878 GO:0003676|GO:0008270
Ssu4g0377 588 SMART helicmild6 408 489 IPR001650 -
Ssu4g0377 588 Pfam Zinc knuckle 546 562 IPR001878 GO:0003676|GO:0008270
Ssu4g0377 588 Gene3D - 368 530 IPR027417 -
Ssu4g0377 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 529 IPR001650 -
Ssu4g0377 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 568 - -
Ssu4g0377 588 CDD DEADc_DDX41 154 359 IPR044113 GO:0000398|GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0377 Ssu-Chr4 6103494 6105260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0377 115 524 Eukaryotic Initiation Factors Gene Family AT3G13920 29.056 5.22e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0377 K13116 - gmx:100819984 1143.26