Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0372 ATGTCAGATTCACAGTCGAATTCAGAGATTTTCAGCGTTCGGATTGTGTCCATCGACTATTACATGGCACCGCCAATCCCAGACGCGGATATCTGTTATAGTAGCTTCCACGgTGGAAAGGTGAATGAGGTGCCTGTAATAAGAGTTTATGGTTCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCAGATATACCACTTCAACCAGACCAAGGTGATGCATACACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTCAAAGGCAGTGCTGGTTCAACGAGACAACATGTGCATGGATGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCATTTGAGGAGTTATTCGTAAAGACATACCTATATTATCCTCAAGATGTTTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGTCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCGAAGATGAAGTTCCGCCACCCCATACCTGACACttgcaagaaattaaatattgatagcCAGCATAGAAAGGCAGATCCACATGCTCATGCATGTTCAGAGTCAAAATTATGGATGTCTTCCATGATCCCATCTGAGTGGATGTGGTCACCCCCAAGAAAATCCGGTGCTTTGTCAAATGATGAGGCTCACCGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGATATTCTTAATCAGCAGTTTAAAATGCATTCATCTCTCTCGCAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAGAAACAGACTGGGATTCATGAGGCTACCATGCCTTCTGATCCTGCCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCCATTGGTCTTgactttgagaaaaaaattattgaattgtgCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTGGGAAGGAATTGAGAGAAACGGACATAATAGGATCGGCATCACCACCAGCTTCATTATGCAAAAATGCCAAATTGCATGAGGAAGGGACTGACACAAATCTTGAAATGTTGACTGTGGATGAAATCCAATCATCTGAAATGATTGGAACGTTGGACATACAGGCTGCTGATAAGGAAGCGCAAAATCTTCTTAAGTGGCTAGCCACTTCTCAAGCTGCAGAGGATATAAACTCTGATGACGAACTTGCTTATGAAACAATCTTGACTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGCAGGAAGCTAATATGGCTTATGAGAGTGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGATTTACCAAAGGAAAAGCCTTCTCATTCCTTTGATCACAATTATCCTATTGGAGCTTCAAACATTATGTTACCCCAAGTTGATGGTTCTAATGATGATGAGTTATCAAGTCCACGTGGTAGTTTGGCTGGAACCTCATCTCTAGTAGAGATAAACAGTGAAAATAAAAGGGCTTCTGAGTGCCACGTACTGCACAATACTGACACAAGTACAGTtagtaaagataaaaggaataaaCAATGGGGGTCTTTGCCTTTTTCCATGATTAATAAGGTTAATAATGATGGAGAGCATGCTACTTCACTTGTGACTCATCCATTTGAAGGTGAGACCGGAGATTCTGTTCACTCAGATTACTTAAACAGAGATGAGGTTAGAAATAGTGCTTGTATTATAAGGAACAAGGGCAAGGATGCTTCAGATTCAAAAGAAGTTCATAGATTGGTTAACTGCTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCAAGTTGAACAAGCTGAATGTGAGTCTGGAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGAACCAAATACACACCTTTGGCAAAAACAACTGGATTTAAAAACAATGCAAACTGATGAAGAGGAAATGGAACGCCAGAAGAATTGTGACTGTGAAGTTAGCAATCATGCTAATTTAGTGCATGGGAAACTGCCCCTTCCAGCTGGCAGTGATAGTCTTTTACAAGCTAGTAGGCCAAATGATGAATGTTTTGGTCAACATGAAATGGAAGGTTTAGAAGCAAGTACAGTGTTGAGTAACTGTACAAATGAAGGGTCTTCTTTAATGCATGGTGGACCAGGCCTCCATAAGCctgaaaatttgtattttattgatTCCATAGACCAATCTGTGGCTTGCAGGGGTGAAAACCTTAAGGTTGGCACAGCTTTTACAAAACCTGTAGCTTCTGATGCCTACACCCAAAATTCCTTTTTAGACACTCAGTTGAGAACAGCTGCTGTTCATACAGTCAGAGCTCCTGAGAGGAGTCTGCAAACTGATTCTTCTGCTTCAAGTAGTGTACAGAGCTTGTTCATTGATGATAAAGTGTCTAGCAAATATAATTGCATGGATCAAAGTTCTCGTGGAAGCATATCTTTTGTGCAACATGATCAGATGAAGTTTTGTGAGACTTCTGTGGAGAAAAGTGCTGCAAATGATGTGCAAGTATTGTTAAGTGAAAAAGTGGATAATCAAAAGCTGGGTGAAAATTTATTGCATGAGACTATTGGCTCTGAACCCACCGACCTAAAGGGTAATCACATGAAATTAACTGAAGTAACCACAGGCAAGAACCCCCTGGCTGATAAGAGCCTTGAAAGCACTTTGTCCTTGCCAACCACCTCTAATACCCATTTACATTTGGACGAGGACAGCTATGATGAAATGCCAGGGGATGATCTGGATGTCCTTCTTCCCATTTCAAGGGATTCTCAGAAAGAGATGGAAACTTGCAATGAGTATGTTACAAATAAAACCCTTACATCTAATGGGACAAAGGGTGTCACCACTCACTATCAAAATGATGGCTCTCACCTATACCTATTGACACCTAATATTTTGCCTCCTTCTGTGGGTACTGTGTGTAGATGGCTTGATGAGAGAGGGCATATTCCTGATCATATACATCAAGAAGCAGATGCAGAGGACAAGGATGTACCTAAATGTGCTTCTGAGACTGAACCTCCTCTTGGGCCTAAGCTGTATCAAGATGCTGACATAGAAAAGAAGCCTCCATGCATTGGAGAAGGACAAACAGAAAGAGTGAAAATGTGCCTAGATGACTCACAAGGTATTTCTCAGATATCAGGCCCTGATGGAAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCCGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCGATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTGTTGAAGTTCTTGTtcttttacatagtaaatttgTACCTTGTCAGAGAAGTTTTGATGGTCTATCTGGCTGTAAAATAGTGGTCTTCACTGATGAGAAGCTCttgttaaaagaatttataaagaTTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCATCACATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCCTTGATTGCTTCTGAAGATACCAAAACTTCTGAAAAAGATATCTTGGAACTGGACATCCATGATACCCCTAGTCTAGATTGTTGTGTGCcagaaaattcaataattgaggATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTCCTTAATGTATGGCGATTGATCCGTGCAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGGAAAATTGCTTCATTTCACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGTAAGATATCGGTGTATCAAATATGTTATGGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATCTGGTAAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTTTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCCTAGTAATGGAACCGGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGTTTTTGCACTTGTCTGGGTAAAGTTGTGGCACCGAAGGCCAGCACACTTGGGGTTAGTTCATTCTCACCTGAGCAACATGTACTGCAGGATTTAAAGGATCAAATCTTGATCACCCCGAATGGTGTTATGTTTGTACCCTCCAAGGTTCGAAGAGGTGTACTGCCCCGCTTATTGGAAGAAATCTTAACAACTAGAATAATGGTAAAACAGGCAATAAAAAAGTTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCGAATGTAACCTATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGCCGTAATACACTGGAAAAGGCTATATCATTTGTAAATCTGCATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGACGTGCTATCAGAGAGTCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCAATGCTATGAATCCTAGACCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGATACGTGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTTTTTGAGCATCAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTATCGGGCAGATTCTGCCTTAAAGAATTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATCTCATCACTTCCTCCTGCTGCAATTGTGGCCGCTAAGGCAATGAGGGTTGACCCTAGGGCAGAACCACGTTATGCCGAGAGAATACCCTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGACTAAATGacttatattacattaataaacaaataataccAGCTTTACAGCGGGTATTTGGGCTTGTTGGTGCTGACCTGAACCATTGGTTTTCGGAGATGCCCCGCCCCATAAGGGAAGCTTCTGCAAAGCATACATTAACTACAAATTTCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGCGATAGGTTGGTCCAGGCATCGGCCCGTTTATGCAACCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAGACCTCAAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTCGAAAGTGGTGTGAAGTGCACGTCCATTTCATGCTTGGTGTTCTATGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGGTGCCACCCATGTTGCTGCAGATAAAGACTTATATCCGAGATGCACAGTGGAATGGTTCTGA 5958 0.4087 MSDSQSNSEIFSVRIVSIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCSDIPLQPDQGDAYTYKVAASLEKALKLKGSAGSTRQHVHGCSLVRARKFYGYHSFEELFVKTYLYYPQDVSRAANLLLAGAVLDKSLQSYESHIPFILQFLVDYNLYGMGHLHLSKMKFRHPIPDTCKKLNIDSQHRKADPHAHACSESKLWMSSMIPSEWMWSPPRKSGALSNDEAHRPKRQSICELEGDTSVDDILNQQFKMHSSLSQTCSDVNMVQSLVPIWEEQQKQTGIHEATMPSDPAKPLPEDVMKLFSIGLDFEKKIIELCSEAETSLFCTPSGKELRETDIIGSASPPASLCKNAKLHEEGTDTNLEMLTVDEIQSSEMIGTLDIQAADKEAQNLLKWLATSQAAEDINSDDELAYETILTPLLPAATIDKVLQEANMAYESESQKECQDILDSIDDMLELDLPKEKPSHSFDHNYPIGASNIMLPQVDGSNDDELSSPRGSLAGTSSLVEINSENKRASECHVLHNTDTSTVSKDKRNKQWGSLPFSMINKVNNDGEHATSLVTHPFEGETGDSVHSDYLNRDEVRNSACIIRNKGKDASDSKEVHRLVNCSLRDLMRRKRSYQVEQAECESGTTKKLLLDRHEEPNTHLWQKQLDLKTMQTDEEEMERQKNCDCEVSNHANLVHGKLPLPAGSDSLLQASRPNDECFGQHEMEGLEASTVLSNCTNEGSSLMHGGPGLHKPENLYFIDSIDQSVACRGENLKVGTAFTKPVASDAYTQNSFLDTQLRTAAVHTVRAPERSLQTDSSASSSVQSLFIDDKVSSKYNCMDQSSRGSISFVQHDQMKFCETSVEKSAANDVQVLLSEKVDNQKLGENLLHETIGSEPTDLKGNHMKLTEVTTGKNPLADKSLESTLSLPTTSNTHLHLDEDSYDEMPGDDLDVLLPISRDSQKEMETCNEYVTNKTLTSNGTKGVTTHYQNDGSHLYLLTPNILPPSVGTVCRWLDERGHIPDHIHQEADAEDKDVPKCASETEPPLGPKLYQDADIEKKPPCIGEGQTERVKMCLDDSQGISQISGPDGKSSFTPLSQIGFRDPASVGCGQQLTLLSIEILAESRGDLLPDPRFDGINIIALGFQNDSDSIVEVLVLLHSKFVPCQRSFDGLSGCKIVVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLIASEDTKTSEKDILELDIHDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRAEVKLNLYSVEAVAEAVLRRKIASFHHKVLTKWFSSGPGRVRYRCIKYVMERAKLNLEILNQLDLVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVAPKASTLGVSSFSPEQHVLQDLKDQILITPNGVMFVPSKVRRGVLPRLLEEILTTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRNTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLRGRAIRESFQIGSEIASAINAMNPRPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFCLKEFIFAKEVRLGTYSARISSLPPAAIVAAKAMRVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRLNDLYYINKQIIPALQRVFGLVGADLNHWFSEMPRPIREASAKHTLTTNFHRTRIDYYYLSKHCVLCDRLVQASARLCNQCSENEVAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLGATHVAADKDLYPRCTVEWF 1985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0372 1985 SUPERFAMILY DNA/RNA polymerases 1438 1852 IPR043502 -
Ssu4g0372 1985 Gene3D - 1158 1434 IPR036397 GO:0003676
Ssu4g0372 1985 Pfam DNA polymerase family B, exonuclease domain 1124 1291 IPR006133 -
Ssu4g0372 1985 Pfam DNA polymerase family B, exonuclease domain 55 211 IPR006133 -
Ssu4g0372 1985 Gene3D Palm domain of DNA polymerase 1437 1682 IPR023211 -
Ssu4g0372 1985 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1977 IPR030559 GO:0006281|GO:0016035|GO:0019985
Ssu4g0372 1985 Gene3D DNA Polymerase, chain B, domain 1 30 195 - -
Ssu4g0372 1985 CDD POLBc_zeta 1399 1847 - -
Ssu4g0372 1985 ProSitePatterns DNA polymerase family B signature. 1618 1626 IPR017964 GO:0000166|GO:0003676
Ssu4g0372 1985 SUPERFAMILY Ribonuclease H-like 36 1398 IPR012337 -
Ssu4g0372 1985 SMART polmehr3 1124 1630 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu4g0372 1985 Pfam C4-type zinc-finger of DNA polymerase delta 1884 1957 IPR025687 -
Ssu4g0372 1985 Pfam DNA polymerase family B 1392 1839 IPR006134 GO:0000166|GO:0003677
Ssu4g0372 1985 PRINTS DNA-directed DNA-polymerase family B signature 1616 1624 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu4g0372 1985 PRINTS DNA-directed DNA-polymerase family B signature 1451 1464 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu4g0372 1985 PRINTS DNA-directed DNA-polymerase family B signature 1560 1572 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu4g0372 1985 MobiDBLite consensus disorder prediction 1040 1066 - -
Ssu4g0372 1985 CDD DNA_polB_zeta_exo 1123 1373 - -
Ssu4g0372 1985 Gene3D - 1693 1857 IPR042087 -
Ssu4g0372 1985 Gene3D Helix hairpin bin 1517 1577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0372 Ssu-Chr4 5987295 6004851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0372 1128 1964 Core DNA Replication Machinery Family AT5G63960 28.621 5.49e-87 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0372 K02350 - gmx:100777934 3528.8