LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g0368	ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTCGTATTCCGCGGTTCGCCGGAGAACGAAGAAACCTCGCTTGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAAGTTCGAGAGTCTTCTCCAAACCCTCGCCGCCGTTGCCATCCATCCCTAAGGACGCTGCGCCTCCGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTACGTTGGAATGAATCTTGATTCCGGAGAGCTTCTAGCGGTTAAACAGGTTTTGATTGCGGCAAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAATTACTGAAAGACCTTTCACATCCCAACATTGTTAGATATCTGGGTACAGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGAGCTTTTCCTGAGGCTGTAATAAGAACTTACACGAAGCAGTTACTGCTTGGACTTGAGTATTTGCACAAAAATGGAATCATGCACAGAGACATTAAGgGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGGCTACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGCCACAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCCCATCCACCAATCCCTGATCATCTCTCAGTTGCAGCAAAAGATTTTTTGCTAAAATGTTTGCAAAAGGAACCAATTTTGAGGTCCTCGGCATCAGAACTGCTGCAGCATCCCTTTGTTACTGGTGAACATATGAATTCTCTTTCTCTGTCATCTAATGTCACGGAAAATTTTGAAGCTTCTTCACCATCATGTGCCTCAAATGTTGAACCCGTCCTTCGCGGCTCAACAGTAAATCTTCTGGATTCGGGAAATAAACAGTCGTGGGGAGTGAgcaataatgatgatgatatgtGTGAGATTGATGACAAAGAGTTCTCACAGAGTGATGTCAAATACAAATCATTGATGTCAAATAATATTGAGagTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGAGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGGGTTAATTTTGGCACCGATGAAAGTTACATGCCACCTAATCAGTTGGGGGCCGATAAGGGGCAgaatgatttttcctttccaGGTGTGCCATCTCTGTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAGCTGAAAAAACTGCAGACGCCTTTATATGAAGAGTTTTACAACAGTTTAAATACTTGTTCTCCCAGTGTGATTGATAGCACAAATGATGACACTGCTTCTCGAAAATACTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTCGGGTACCAATTAGCACTCCATCTAAAGCCGTTGAGAATGGTGGAAGTCCTGGAAGTAATGGTCGGTCCTCATCAACTGTTGGCCATGTAAATAACCATAGTTCACAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGACTGATAGTTGACTCTCAGCAGCAGCCCAGTAGCCCAAGTATAAACTTTTCCGAGAGACAGAGGAAGTGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGCATGGGCGGAAAGTCATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAACGGACAAGATTTGCTTCTCCCAGCAAATAA	1965	0.4427	MQDIFGSVRRSLVFRGSPENEETSLGVGGSLVDKISYCIRSSRVFSKPSPPLPSIPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPILRSSASELLQHPFVTGEHMNSLSLSSNVTENFEASSPSCASNVEPVLRGSTVNLLDSGNKQSWGVSNNDDDMCEIDDKEFSQSDVKYKSLMSNNIESFNPMSDPSDDWECKFDASPELENRGVNFGTDESYMPPNQLGADKGQNDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTCSPSVIDSTNDDTASRKYLKLPPKSRSPSRVPISTPSKAVENGGSPGSNGRSSSTVGHVNNHSSQDIPASPLNEWKGLIVDSQQQPSSPSINFSERQRKWKEELDQELERKREMMRQAGMGGKSSSPKDRALHRQRERTRFASPSK	654

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu4g0368	654	SMART	serkin_6	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu4g0368	654	Gene3D	Transferase(Phosphotransferase) domain 1	64	358	-	-
Ssu4g0368	654	MobiDBLite	consensus disorder prediction	635	654	-	-
Ssu4g0368	654	MobiDBLite	consensus disorder prediction	617	654	-	-
Ssu4g0368	654	Coils	Coil	605	625	-	-
Ssu4g0368	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
Ssu4g0368	654	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1	1	617	-	-
Ssu4g0368	654	CDD	STKc_MAPKKK	64	328	-	-
Ssu4g0368	654	MobiDBLite	consensus disorder prediction	536	578	-	-
Ssu4g0368	654	SUPERFAMILY	Protein kinase-like (PK-like)	64	329	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g0368	Ssu-Chr4	5884830	5890303	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g0368	1	654	MAP Kinase Kinase Kinase	AT1G54960	57.082	0.0	697

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Ssu4g0368		Pkinase	2.3e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g0368	K20606		-	gmx:100807537	1152.5

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