Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0368 ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTCGTATTCCGCGGTTCGCCGGAGAACGAAGAAACCTCGCTTGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAAGTTCGAGAGTCTTCTCCAAACCCTCGCCGCCGTTGCCATCCATCCCTAAGGACGCTGCGCCTCCGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTACGTTGGAATGAATCTTGATTCCGGAGAGCTTCTAGCGGTTAAACAGGTTTTGATTGCGGCAAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAATTACTGAAAGACCTTTCACATCCCAACATTGTTAGATATCTGGGTACAGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGAGCTTTTCCTGAGGCTGTAATAAGAACTTACACGAAGCAGTTACTGCTTGGACTTGAGTATTTGCACAAAAATGGAATCATGCACAGAGACATTAAGgGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGGCTACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGCCACAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCCCATCCACCAATCCCTGATCATCTCTCAGTTGCAGCAAAAGATTTTTTGCTAAAATGTTTGCAAAAGGAACCAATTTTGAGGTCCTCGGCATCAGAACTGCTGCAGCATCCCTTTGTTACTGGTGAACATATGAATTCTCTTTCTCTGTCATCTAATGTCACGGAAAATTTTGAAGCTTCTTCACCATCATGTGCCTCAAATGTTGAACCCGTCCTTCGCGGCTCAACAGTAAATCTTCTGGATTCGGGAAATAAACAGTCGTGGGGAGTGAgcaataatgatgatgatatgtGTGAGATTGATGACAAAGAGTTCTCACAGAGTGATGTCAAATACAAATCATTGATGTCAAATAATATTGAGagTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGAGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGGGTTAATTTTGGCACCGATGAAAGTTACATGCCACCTAATCAGTTGGGGGCCGATAAGGGGCAgaatgatttttcctttccaGGTGTGCCATCTCTGTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAGCTGAAAAAACTGCAGACGCCTTTATATGAAGAGTTTTACAACAGTTTAAATACTTGTTCTCCCAGTGTGATTGATAGCACAAATGATGACACTGCTTCTCGAAAATACTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTCGGGTACCAATTAGCACTCCATCTAAAGCCGTTGAGAATGGTGGAAGTCCTGGAAGTAATGGTCGGTCCTCATCAACTGTTGGCCATGTAAATAACCATAGTTCACAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGACTGATAGTTGACTCTCAGCAGCAGCCCAGTAGCCCAAGTATAAACTTTTCCGAGAGACAGAGGAAGTGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGCATGGGCGGAAAGTCATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAACGGACAAGATTTGCTTCTCCCAGCAAATAA 1965 0.4427 MQDIFGSVRRSLVFRGSPENEETSLGVGGSLVDKISYCIRSSRVFSKPSPPLPSIPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPILRSSASELLQHPFVTGEHMNSLSLSSNVTENFEASSPSCASNVEPVLRGSTVNLLDSGNKQSWGVSNNDDDMCEIDDKEFSQSDVKYKSLMSNNIESFNPMSDPSDDWECKFDASPELENRGVNFGTDESYMPPNQLGADKGQNDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTCSPSVIDSTNDDTASRKYLKLPPKSRSPSRVPISTPSKAVENGGSPGSNGRSSSTVGHVNNHSSQDIPASPLNEWKGLIVDSQQQPSSPSINFSERQRKWKEELDQELERKREMMRQAGMGGKSSSPKDRALHRQRERTRFASPSK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0368 654 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0368 654 Gene3D Transferase(Phosphotransferase) domain 1 64 358 - -
Ssu4g0368 654 MobiDBLite consensus disorder prediction 635 654 - -
Ssu4g0368 654 MobiDBLite consensus disorder prediction 617 654 - -
Ssu4g0368 654 Coils Coil 605 625 - -
Ssu4g0368 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Ssu4g0368 654 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1 1 617 - -
Ssu4g0368 654 CDD STKc_MAPKKK 64 328 - -
Ssu4g0368 654 MobiDBLite consensus disorder prediction 536 578 - -
Ssu4g0368 654 SUPERFAMILY Protein kinase-like (PK-like) 64 329 IPR011009 -
Ssu4g0368 654 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Ssu4g0368 654 MobiDBLite consensus disorder prediction 526 578 - -
Ssu4g0368 654 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0368 654 Coils Coil 98 125 - -
Ssu4g0368 654 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 617 - -
Ssu4g0368 654 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0368 Ssu-Chr4 5884830 5890303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0368 1 654 MAP Kinase Kinase Kinase AT1G54960 57.082 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu4g0368 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0368 K20606 - gmx:100807537 1152.5