Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0349 ATGGCCATTGTCACAGAGTGTAGCCATAAGAGTACTCTAAAAATCAGTGATCCGTGGCCATTTAGAATCAAGCTTACAACGGATCGTATGCGCTGGGATAGCCTCAAGATCTCACCTTCTAAGGAGTTTGAAGAATACATTctaggacacatgaatgaaagTAGCCGCAAAGCTTTGGAGTCATGGATTCCGGTAAACATATTGATTTATGATGTTGATACTTGTGAAACTTATGATGCTAAGTTGTCCAAGAAAGAGTCGTTTTGGTTTGATCCTATGCCTGTTTTGGGTGAAAAGCCAAAGAAGGGTGAATGCCCTTGTTCTTTTAAGACGGCCATGAGGGAGCCACCTTGTTACAATTTGGCGAAGGCAAGGGAAGAGTTTGCTTATTCAATTGAGCCTTTTAGACACATTATAAGGAAAAGAGATCTAAAATATGATCAAGAAATTGGACTTCGCTATTGTGGTGGCAAGTGCAGAGCACGCCTCTGCACTCTACAATTTGTGGTTTGTGTTGCACAAGCACAGCTCAGCTTCGGTCCATCATCGACACTTCATAAGGTCATGTTTTTAAATCAACAAGTTTTGGAGGAGCTAGTAGAGCAGCAACAACAGCTGGAATTGCAACTGGATGTGGCCCATCATCTTAATCACATCCAACTActgttggttgtggttgaaaATATgtACATTTTTTTGAAGAACACATTTGGAACAAATCAAGGATGCAATGTGTTACAGGTTACAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCTGCTAAGCATTATATGCTTGACAAATTGGGTGGTGCATTTTCAGGAAAATGCGATCATGTTCTTGGAGTAGCGGGTGATTGTTCATGCGGTGGTAATGTTGACAGTGACGGTTGTGGCGATGCCGACAATGATGGTTATGGAGGTGTCAACAGAGGCAGTTGTGGTAGTACCGGTTATGATCGTGGCGAtgccagtggtggtggtgacgatacctgtggtggtggcggcggcgacactgttggttgtggttgtggtggtggcggtgaagATGATAATGGTgaagaagcttgtggtggtggaggcgatgctggTGGTCATGGTCGTAGTCGTAGTCGTGGTAGTGGTGGTGCCGGTGCCAGTAGTCGTGGTGGTGACGGTAGCGGTCGTAGTGGTGGTGACGGCGCTTGTGGCAATGGCAGcaacagtagtggtggtgataatggtggtggttggggtggtggtggcgagaaaggttattgtcaaatatag 1269 0.3625 MAIVTECSHKSTLKISDPWPFRIKLTTDRMRWDSLKISPSKEFEEYILGHMNESSRKALESWIPVNILIYDVDTCETYDAKLSKKESFWFDPMPVLGEKPKKGECPCSFKTAMREPPCYNLAKAREEFAYSIEPFRHIIRKRDLKYDQEIGLRYCGGKCRARLCTLQFVVCVAQAQLSFGPSSTLHKVMFLNQQVLEELVEQQQQLELQLDVAHHLNHIQLLLVVVENMYIFLKNTFGTNQGCNVLQVTGLKKHLKRLNAAKHYMLDKLGGAFSGKCDHVLGVAGDCSCGGNVDSDGCGDADNDGYGGVNRGSCGSTGYDRGDASGGGDDTCGGGGGDTVGCGCGGGGEDDNGEEACGGGGDAGGHGRSRSRGSGGAGASSRGGDGSGRSGGDGACGNGSNSSGGDNGGGWGGGGEKGYCQI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0349 422 Pfam RS4NT (NUC023) domain 250 273 IPR013843 -
Ssu4g0349 422 Coils Coil 196 216 - -
Ssu4g0349 422 MobiDBLite consensus disorder prediction 355 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0349 Ssu-Chr4 5731550 5739434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0349 250 276 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 85.185 5.89e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0349 K02987 - pvu:PHAVU_006G093000g 241.506