Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0347 ATGGATCATCAAGGACATAGCCAGAACCCATCTATGGGGGTTGTCGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCCAGGCCAAATAACTGGGGCACCAGGGTCAGTTGTGACATCAGTTGGGACCATTCAATCCAGCGGTCAACCTACTGGAGCTCAGCTGGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCACCAACTTCAGCAACAGCTTCAACAATTTTGGTCAAACCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACtgacatatttgatttcttggttgaCATTGTGCCTCGCGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCACTTTCATACTGCTACATGCCGCCTCAGCATGCGCCCCAAGTTGGAACTGGTGTCATAATGGGCAAGCCGGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCACAGCCACCAGACCAACGACAGTCATCCCCTGAACATTAG 780 0.4603 MDHQGHSQNPSMGVVGSGAQLTYGSNPYQPGQITGAPGSVVTSVGTIQSSGQPTGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALSYCYMPPQHAPQVGTGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPEH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0347 259 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Ssu4g0347 259 SUPERFAMILY Histone-fold 73 173 IPR009072 GO:0046982
Ssu4g0347 259 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g0347 259 Pfam Core histone H2A/H2B/H3/H4 69 164 IPR007125 GO:0003677
Ssu4g0347 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Ssu4g0347 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0347 Ssu-Chr4 5724824 5725603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0347 1 246 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.134 2.24e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu4g0347 CBFD_NFYB_HMF 5.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0347 K08066 - gmx:100527803 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0347 4 5724824 5725603 Ssu7g1685 7 34863345 34864133 PCT