Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0340 ATGAAAAAAGACACGGCCCTGTTCTTCCTCCTCGTCTTCCCAGGAATCGCTATCGCCTCCGCGCAGGCCCAGTCCCAGCCCAATGACTACTCCGACCCAAACCTCAACCAGTTCAACCCATCCCTAGCCATAATCATCATCATACTAGTCGCCGCGCTTTTCCTGATGGGCTTCTTCTCCATCTACATACGCCGCTGCGCCGACTCCCCGTCCAGCAACGTTGGGCCCGCGACGGCCGCTCGCTCCAGGAGGGGCGCGCGCGGGCTCGACCCGTCCGTGATCCAAACGTTCCCGATCCTCGAATACTCCGAGGTTAAGGTCCACAAAATCGGAAAAGAGGCGCTGGAATGCGCGGTGTGCCTGTGCGAGTTCGAGGAGGCCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCCGCGTGCATCGACGAGTGGCTGGGCTCCCACACCACGTGCCCCGTTTGCCGCGCCAACCTCGTTCCCAGCGAGTCCGAGGCTGGTGTTCCCGTTCCCGAAACGCGAGACGTCGAAGCCCAAAACGACGCCGTCGAACCCGCGCCGGAGCAGCAAAACGCGGACGCGGACCGGGTCCTGCCCGAGCCCGAGGTGGTTTCCGTGGACAAGACGCTGAACCGGAACCGCACGCGAGGGTCGCGGTCGAGCCGGCCGCGGCGGTTTCCGAGGTCGCACTCGACCGGGCACTCGCTGGTCCAGCCGGGCGAGAACACGGACCGGTTCACCTTGAGGCTGCCGTTGGAGGTGAGGAAGCAATTGATAAACCGGCAATTGCAGCGTGCGAGTAGCTTGATCGTGTTGCCTAGGGAAAGTAGCTCGAGGCAGGGTTACCGAACCGGGGAAGGGAGTAGTAGAGGGAAGGTTTCGAGGCGGCTCGACCGGAGTACGAAATCGGACCGGTGGATTTTCACCATGGCTGCGCCCTTTTTCGCGAGGGCCTTGTCTATTAGGTCGCCTAGGGTGCGTAACAATGACGTTGAAGGGACGTCGTCGTCTTCCTCCGCGCCTATTATGCCGCCGACGGCCGTTGACTCGGCTCGGCCTCCGGTTTAA 1077 0.6221 MKKDTALFFLLVFPGIAIASAQAQSQPNDYSDPNLNQFNPSLAIIIIILVAALFLMGFFSIYIRRCADSPSSNVGPATAARSRRGARGLDPSVIQTFPILEYSEVKVHKIGKEALECAVCLCEFEEAETLRLIPKCDHVFHPACIDEWLGSHTTCPVCRANLVPSESEAGVPVPETRDVEAQNDAVEPAPEQQNADADRVLPEPEVVSVDKTLNRNRTRGSRSSRPRRFPRSHSTGHSLVQPGENTDRFTLRLPLEVRKQLINRQLQRASSLIVLPRESSSRQGYRTGEGSSRGKVSRRLDRSTKSDRWIFTMAAPFFARALSIRSPRVRNNDVEGTSSSSSAPIMPPTAVDSARPPV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0340 358 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 300 - -
Ssu4g0340 358 MobiDBLite consensus disorder prediction 218 232 - -
Ssu4g0340 358 MobiDBLite consensus disorder prediction 330 358 - -
Ssu4g0340 358 MobiDBLite consensus disorder prediction 277 302 - -
Ssu4g0340 358 PANTHER RING FINGER DOMAIN-CONTAINING 1 300 - -
Ssu4g0340 358 Pfam Ring finger domain 116 159 IPR001841 -
Ssu4g0340 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 165 IPR013083 -
Ssu4g0340 358 SMART ring_2 117 158 IPR001841 -
Ssu4g0340 358 MobiDBLite consensus disorder prediction 179 245 - -
Ssu4g0340 358 MobiDBLite consensus disorder prediction 330 347 - -
Ssu4g0340 358 CDD RING-H2_EL5_like 116 159 - -
Ssu4g0340 358 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Ssu4g0340 358 SUPERFAMILY RING/U-box 116 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0340 Ssu-Chr4 5653098 5654174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0340 7 355 Rapid Response to Elicitors AT3G05200 45.278 1.99e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0340 K10664 - gmx:100781706 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0340 4 5653098 5654174 Ssu7g1679 7 34811691 34812653 PCT