Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0338 ATGGCACTAGAAGCAGTAGTGTATCCCCAACCCCAAGACCCGTTTGGCTACGGAGTCAAAGACCCCTACAACTACAACAATTTGTTAGAAGGTGGTGGAGGCAACTGGGGCTACGGAGATTTCAACCTTGAAAAAGAAGAGCAAGGTTGTGTAACTTTTGTGGAGAACCAAACACAGAATTATGCTTTTGGTGAATGGAACTGTTCTCCTCCACCATCGATGTTGCCTCCTTCTTCAGAGACCAGCAACACACAGAACAACTTAGATAGCTCAACTTCCACCCCTGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGAAAAAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCCGAATCTTACGTCCAAAGGGGTGATCAAGCTTCTATTATTGGGGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAGTTTCTTGGTGCtcagaaagagaaagaggggaAATCTGATGTGCCCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCAGTGGTGGCTGTGACAATTCTGCAGCCATGAGCGAGCAAAAGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAACTCTTGAAAATAGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACTGGGGAAATTGTCCTCTATTCTCTCAGTGTTAAGGTAGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAATTGCTGGATAGGATTCAACAAGAGTCCATGTTGAATTAA 930 0.443 MALEAVVYPQPQDPFGYGVKDPYNYNNLLEGGGGNWGYGDFNLEKEEQGCVTFVENQTQNYAFGEWNCSPPPSMLPPSSETSNTQNNLDSSTSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKSDVPFSEFFSFPQYSTSASGGCDNSAAMSEQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQLLDRIQQESMLN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0338 309 MobiDBLite consensus disorder prediction 78 94 - -
Ssu4g0338 309 Gene3D - 100 180 IPR036638 GO:0046983
Ssu4g0338 309 SMART finulus 120 171 IPR011598 GO:0046983
Ssu4g0338 309 PANTHER MAX DIMERIZATION, MAD 1 309 - -
Ssu4g0338 309 Coils Coil 162 182 - -
Ssu4g0338 309 Pfam Helix-loop-helix DNA-binding domain 115 166 IPR011598 GO:0046983
Ssu4g0338 309 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 309 - -
Ssu4g0338 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 178 IPR036638 GO:0046983
Ssu4g0338 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
Ssu4g0338 309 MobiDBLite consensus disorder prediction 65 112 - -
Ssu4g0338 309 CDD bHLH_AtFAMA_like 117 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0338 Ssu-Chr4 5580717 5582211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0338 1 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.718 3.29e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g0338 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0338 - - gmx:100777413 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0338 4 5580717 5582211 Ssu7g1678 7 34739117 34740360 PCT