Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0321 ATGGTCCCAATTGACCATGCTTTTAATGACATGCACAAAAAGCGAggcattttgttttcttgcccTGTTTCTGCCCAAGAATCGGGAGAATTCGATTTggtgaaagagaaaaatgtcGTAACTCTTAGAGAACTCTTACAAGACTGCATTAGAGACACTGACAACTCTCATCAACCACCTGAATTGGCTGCTAGTTGTCCAAGCTTAAGGATACGGTTTCACTGGAGCAGGTTTTTTAAACTATGGAAAATAAGATCAATTAAGCACCTACCATCTTTTCCTCCAAGTTGTGTGCCAAACATAACAAAGTCTAAAAGCAGAAGCATTGGAGAAAATCCTGTTCCATGTAATCTACACAGTTCCAGAACTTCTTTGGTGAATTTCAGCCTCTCCGACCTGAGAAATGCTACCAACAATTTTAGCAATGAAAATTTAATTGGAAGAGGTGGCTATGCTGATGTTTACAAGGGTCGGCTCCAAGATGGGCAACTAATAGCGGTTAAGCGACTGAATAAAGGGAGTCCAGAAGAGAGGACGTCTAGCTTTCTATCTGAGTTAGGCACGCTTGCTCATGTTGACCATCCTAATACTGCCAAGCTTATTGGATGTGGAGTAGAAGGAGGAATGCACCTTGTCTTCCATCTATCTCCGCTGGGAAATTTAGGGTCTCTTCTTCATGgtccaaataaaaatacattagatTGGAGTAAAAGGTATAAAATTGTTATGGGGATAGCGGATGGCCTCCTCTATCTTCATGAGATTTGTCAAAGGCGAATCATTCATAGAGATCTTAAAGCAGAGAATATTCTACTCACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCAAAATGGTTACCAGAACAGTATACTCAccataatatatcaaaatttgaagGTACATTGGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAGACGAGAAAACTGATATTTATTCCTTTGGGGTCCTGCTTTTGGAGATTATAACTGGGCGTCGTGCTTTGGACCATTTGCAACAAAGTCTTGTGTTATGGGCAAAGCCTTTATTTGAAGCTAATAATATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACCGGGAACATATGGATCGTGTTGTTTTGACTGCATCTCTATGTGTTGAGCAGTCTCCTATCTTACGCCCCCGCATGAGCCAGGTTGCAATACTGCTAAGAGGTGATGACTTTGTGTTGGAAGATACTCAGAGGACTAACAAGATGCTCAAGAATACAACTCAACAAACTATATAA 1296 0.3843 MVPIDHAFNDMHKKRGILFSCPVSAQESGEFDLVKEKNVVTLRELLQDCIRDTDNSHQPPELAASCPSLRIRFHWSRFFKLWKIRSIKHLPSFPPSCVPNITKSKSRSIGENPVPCNLHSSRTSLVNFSLSDLRNATNNFSNENLIGRGGYADVYKGRLQDGQLIAVKRLNKGSPEERTSSFLSELGTLAHVDHPNTAKLIGCGVEGGMHLVFHLSPLGNLGSLLHGPNKNTLDWSKRYKIVMGIADGLLYLHEICQRRIIHRDLKAENILLTENFEPQICDFGLAKWLPEQYTHHNISKFEGTLGYFAPEYLMHGIVDEKTDIYSFGVLLLEIITGRRALDHLQQSLVLWAKPLFEANNIKDLVDPSLGDDYDREHMDRVVLTASLCVEQSPILRPRMSQVAILLRGDDFVLEDTQRTNKMLKNTTQQTI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0321 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Ssu4g0321 431 Pfam Protein tyrosine and serine/threonine kinase 143 350 IPR001245 GO:0004672|GO:0006468
Ssu4g0321 431 SMART serkin_6 140 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0321 431 SUPERFAMILY Protein kinase-like (PK-like) 120 405 IPR011009 -
Ssu4g0321 431 Gene3D Transferase(Phosphotransferase) domain 1 217 427 - -
Ssu4g0321 431 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
Ssu4g0321 431 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 44 418 - -
Ssu4g0321 431 Gene3D Phosphorylase Kinase; domain 1 102 214 - -
Ssu4g0321 431 PANTHER OS08G0249100 PROTEIN 44 418 - -
Ssu4g0321 431 ProSiteProfiles Protein kinase domain profile. 140 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0321 Ssu-Chr4 5334158 5337612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0321 125 425 Receptor kinase-like Gene Family AT1G53420 43.038 1.55e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu4g0321 PK_Tyr_Ser-Thr 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0321 - - gmx:113001177 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0321 4 5334158 5337612 Ssu7g1667 7 34644676 34647393 ECH
Ssu7g2062 7 40845872 40847459 Ssu4g0321 4 5334158 5337612 ECH
Ssu1g0785 1 17232848 17234285 Ssu4g0321 4 5334158 5337612 ECH
Ssu4g0321 4 5334158 5337612 Ssu4g0321 4 5334158 5337612 ECH
Ssu4g0321 4 5334158 5337612 Ssu7g1667 7 34644676 34647393 PCT