Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0311 ATGGAGTGCAACAAGGATGAAGCTATGAGGGCTAAGCAGATTGCTGAAAATAAGATGCAAGCTGGTGACTTTGATGGGGCGCTGAAATTTGCTACGAAAGCCCAAAGGCTGTTTCCTGAGATTCAGTACATTGTTCAGATCCTTGCAGTCTGTGAGGTTCATTGTGCGGCACAGAAGAAACATTCTGGGTCTGACATGGACTGGTATGGAATTCTGCAGACTCCACGGTCGGCCGATGAAGCAATCATAAAGAAACAGTATAGGAAGCTCGCACTGCTACTTCATcctgataaaaataaatctgcTGGTGCAGAGGCTGCTTTCAAGTTGATTGGTGAAGCTAACAGAGTGTTGAGTGACCAAACAAAGCGCACTTTGTATGACTCAAGGTCTGGAGTTCCTGTGGGAAATACAGCATCTAAGGTTCCACCTCGTCACCCAAATGGGAATTCTTCTGGGACAAAATGTGATGGAACTGCAAGAAATTATCAGAACAGTTTTTATTCACAATCCCATGCTTGGAATGCATATCACCGGGTTGAAAATCAGACATTCTGGACATGTTGCCCTCATTGTAATACTAGATATCAATACttcaaaaccattttaaatCATACCATACGCTGTCAACAATGTTCTAAATCCTTTACAGCTCATGATATGGGGAACCACAATGTGCCACCAGGATATTGTTCACCATTTAATAACCAGAAAGAGCCTCCAAAACATGCATCGACAAAAGAAGCATCAAAAAGCAGTGGTGGAAAATCTTGTGGTAGAGGACAGGAGGGTGTATCCGTGACAAAATGCACTGCTGGAGTTGGTGCCTATTCTAAAGTTGAAAAGAGCAGAGAAGGCCATGTGGCTGCAAGAGTGACAAAGGCTGGTGTTGGAACGTCCAACCCCACTAATTCCAAAGCCAAGGAATTGCAAACCTCAACAAAGGTTGGGCATAAGAGAGCAAGACAGTCAACATCAGATGCTGAAAACAAAGCTGGAAATGGTAAAGGCATGAAAGATACCAAGGTTCAAGAAAATAGGATTGATCCTCATAGGAGATCTTCAAGGAAAAAACAGCATGTTTCATGCACAGATACCAATCAAGATGATGATTTTGGGAGTTCTTCCAAAAGGCCACGCCATCATGAATCATTTACCACCACTGAAGTGGAGAAAAGAGAAGTGCCCACAACTGGTGGGTTGTTCACTAACAATAATCAAGCCTCTTTTACTGCTGGCGTGGGTGGTCAGAATGGAGAGATGAGAAGTAAAGCAAGTGCACCACCTGAAGAAACAGTTTTAAGGAATAAAACCAAAGTTGAGCAGTCAAATGCGCGAAGAAAGGAGGCATCTAACTCAGATCTTAATGATAGAAAGTCAAAAGCTGACAATTGTTCTCCACTGAAGTCAAATTTACCTCCCAGTTCAGAGATTTGCTGTCCTGATCCAGATTTCTGTGATTTTGAGAGAGATAAGGCAGAGGATTGTTTTGCTGTTAATCAATTATGGGCTATTTTTGATAATACTGATAGTATGCCAAGATTCTATGCTCTTGTCAAGAAAGTGTACTCCCCTTTCAAGTTGCGGATTACCTGGCTGGAACCTGACTCAGATGACCAAGGTGAGATTGACTGGCATGAAGCAGGTTTGCCTGTTGCTTGTGGTAAGTTCAAACTTGGTCATTCTCAGAGAACTACAGATCGTTTTATGTTCTCTCATCAGATGCATTGCATAAAAGGAAGTGACACTGGTACTTATCTAGTATATCCAGAGAAGGGAGAAACTTGGGCAATTTTCAGACATTGGGATATTGGATGGAGTTCTAATCCAGAAAAGCATTCAGAGTATCAATTTGAATATGTGGAAGTTCTATctgattttgatgaaaatgttggcATTAAAGTTGCTTATCTTGGCAAACTGAAAGGGTTTGTTAGTCTCTTTCAGCAAACTGTGCTGAATGGAATTAGCTTGTTTTGTATTCTGCCTAATGAGCTATATAGGTTCTCACATCGGATTCCTTCATATAAGATGACAGGTGCTGAAAGGAAAGATGTTCCAAGAGGATCTTTTGAATTTGATCCTGCTGGTCTACCTAATGGTCTTTTTGAAGTTGGTGATCCAGGTGTTGGGAAGATGGATGGAGTCAATTGTTCGCGCGATGAATACTCAAAGTGTAAAGTTGAACAGGCAATGTCTAATGGTAGTATTCACAAAGCAAAGTTGCGAGAAAGTAATGATGCTGAAAGAGTCTCACAAATCCTCAGAAGATCGCCAAGGTCAAGCCAAAAAAGTATGGACAATGGTCAAGCAAGCACTAGTCAGCATACGGTCAGAAAGGATGACAAAAACATTGGCCACAGGGACTGCATTCCACCAGAGGGAAACACTGCTGCATCTCAGACTAATGAGAGGAAGGTCAAGACACCTCAgaaacatgagaaaaataattatgaaggAGAGACACTGAAAGCTCGAAAGTCACCTAGAGATTTAAGCAAGAAAAATGCTCAAGGAGATGCAGGTGAATGGACAACAGGCAAGTTGACTGATAATCATTCAACTGGCAGCGAAAATGTGAAGGGCAGCAATATTCCTCAGTCGGTAGCATCGTGTTATGGCTTTAAGAAGGAAAAGTCTGAAGAGATGTTTCAGTGTGGTCAGATATGGGCAATATATAGTGATAGGGATCATATGCCCGatacttatgctcaaattaAGATTATTGAATTCACTCCTAATTTTAGACTGCAGGTGTCCGTGCTTGAACCCTGCTCACCACcaaattacttaaaaagaacaataTCTTGTGGTACCTTCAAAGTTAAAAAAGCCCAATTACagattctttctctctctgcaTTCTCTCATCAATTAAAAGTTGAACCTGTGGCAAATAATAGATATGAAATTTACCCTAGAAAAGGTGAGATTTGGGCTCTATACAAGGACCAGAAGTATGAACTGACTTCTTCAAATCAGGGCAGAGGTGAATGTCATATAGTAGAAGTATTAGCAGATAGTGACAAGAGTATACAAGTTGTTGTTCTGATGCCGCATGGCAACTCCCAGACAATTTTCAAGGCTCCTAGAATTCAGAGATCTAAAACTGGTgtaattgaaatattaagagAAGAGGTTGGCAGATTCTCGCATCAGATTCCTGCTTTTCAGCACAGTGGGGAAGACAATGTTCATCTCAGAGGGTGTTGGGAGCTTGATCCTTCTTCAGTTCCTGGTTCTTTCATACCATTAGACTGa 3261 0.3987 MECNKDEAMRAKQIAENKMQAGDFDGALKFATKAQRLFPEIQYIVQILAVCEVHCAAQKKHSGSDMDWYGILQTPRSADEAIIKKQYRKLALLLHPDKNKSAGAEAAFKLIGEANRVLSDQTKRTLYDSRSGVPVGNTASKVPPRHPNGNSSGTKCDGTARNYQNSFYSQSHAWNAYHRVENQTFWTCCPHCNTRYQYFKTILNHTIRCQQCSKSFTAHDMGNHNVPPGYCSPFNNQKEPPKHASTKEASKSSGGKSCGRGQEGVSVTKCTAGVGAYSKVEKSREGHVAARVTKAGVGTSNPTNSKAKELQTSTKVGHKRARQSTSDAENKAGNGKGMKDTKVQENRIDPHRRSSRKKQHVSCTDTNQDDDFGSSSKRPRHHESFTTTEVEKREVPTTGGLFTNNNQASFTAGVGGQNGEMRSKASAPPEETVLRNKTKVEQSNARRKEASNSDLNDRKSKADNCSPLKSNLPPSSEICCPDPDFCDFERDKAEDCFAVNQLWAIFDNTDSMPRFYALVKKVYSPFKLRITWLEPDSDDQGEIDWHEAGLPVACGKFKLGHSQRTTDRFMFSHQMHCIKGSDTGTYLVYPEKGETWAIFRHWDIGWSSNPEKHSEYQFEYVEVLSDFDENVGIKVAYLGKLKGFVSLFQQTVLNGISLFCILPNELYRFSHRIPSYKMTGAERKDVPRGSFEFDPAGLPNGLFEVGDPGVGKMDGVNCSRDEYSKCKVEQAMSNGSIHKAKLRESNDAERVSQILRRSPRSSQKSMDNGQASTSQHTVRKDDKNIGHRDCIPPEGNTAASQTNERKVKTPQKHEKNNYEGETLKARKSPRDLSKKNAQGDAGEWTTGKLTDNHSTGSENVKGSNIPQSVASCYGFKKEKSEEMFQCGQIWAIYSDRDHMPDTYAQIKIIEFTPNFRLQVSVLEPCSPPNYLKRTISCGTFKVKKAQLQILSLSAFSHQLKVEPVANNRYEIYPRKGEIWALYKDQKYELTSSNQGRGECHIVEVLADSDKSIQVVVLMPHGNSQTIFKAPRIQRSKTGVIEILREEVGRFSHQIPAFQHSGEDNVHLRGCWELDPSSVPGSFIPLD 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0311 1086 PRINTS DnaJ domain signature 103 123 IPR001623 -
Ssu4g0311 1086 PRINTS DnaJ domain signature 69 87 IPR001623 -
Ssu4g0311 1086 PRINTS DnaJ domain signature 87 102 IPR001623 -
Ssu4g0311 1086 SMART dnaj_3 66 123 IPR001623 -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 755 775 - -
Ssu4g0311 1086 Gene3D DnaJ domain 52 139 IPR036869 -
Ssu4g0311 1086 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 740 754 - -
Ssu4g0311 1086 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 708 - -
Ssu4g0311 1086 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 760 1081 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 312 326 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 143 157 - -
Ssu4g0311 1086 PANTHER - 1 708 - -
Ssu4g0311 1086 PANTHER - 760 1081 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 737 863 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 359 390 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 398 416 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 333 352 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 229 263 - -
Ssu4g0311 1086 Pfam Domain of unknown function (DUF3444) 871 1062 IPR024593 -
Ssu4g0311 1086 Pfam Domain of unknown function (DUF3444) 476 682 IPR024593 -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 434 464 - -
Ssu4g0311 1086 Pfam DnaJ domain 67 128 IPR001623 -
Ssu4g0311 1086 CDD DnaJ 67 120 IPR001623 -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 278 469 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 296 311 - -
Ssu4g0311 1086 SUPERFAMILY Chaperone J-domain 64 129 IPR036869 -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 806 837 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 839 863 - -
Ssu4g0311 1086 MobiDBLite consensus disorder prediction 129 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0311 Ssu-Chr4 5152630 5155890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0311 4 228 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.609 9.70e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0311 - - gmx:100782762 1880.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0311 4 5152630 5155890 Ssu4g0311 4 5152630 5155890 ECH