Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0302 ATGGGTGTTGGTAAATCACTGGAGATAGGGGATTATCTagCAATTGGTGCAATATTTGCCGCGACAGATTCTGTGTGCACATTGCAGGTGCTAAACCAGGATGAGACACCTTTACTGTACAGCCTTGTATTTGGCGAGGGTGTTGTGAATGACGCTGCATCTGTGGTTCTTTtcaatgcaataaaaaattttgacgTCAACCAAATTGACCACAGAATTGGTTTGCATTTTTTTGGCAACTTCTTGTATCTGTTTATCGCAAGCACCTTGCTTGGGGTTTTGGCAGGTCTACTTAGCGCTTACATTATTAAAAAGCTGTATATTGGCAGGCACTCTACAGATCGTGAGGTTGCTCTCATGATGCTAATGGCATACCTTTCCTACATTTTGGCTGAATTATGGTATCTAAGTGGAATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCCCATTATACTTGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATGCTTTTGCAACTCTATCTTTTGTTCTTGAGACCTTTATCTTCCTTTATGTTGGTATGGATGCGTTGGACATTGAAAAGTGGAGGTTTGTTAGTGATAGGCCTAGAACATCTGTTACTGTGAGTTCAGTATTATTGGGTCTAGTACTTGCTGGAAGAGCAGCGTTTGTTTTTCCCCTATCCTTCTTATCCAACCTCACTAAAAAGTCGCCAAGTGAGAAAATAAGTTTCAGGGAGCAGGTGATAATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTACAATCAGGTAAGAGGAACGTTGCTCATTAGGATTCACCTGTCGGGTCACACTGAGCTGCAAACCAATGCCATCATGATCACCAGCACCATCACTGTTGTGCTTGTCAGCACAGTGGTGTTTGGTTTGATGACTAAGCCACTCATAAGGTTTTTGCTGCCTGTTAGTCCCCCTCCTAAACGCAAAAACAGCATGGCAAATATAGATTCATCTAATAACTCCCCCAAATCAATCAGTGTGCCCTTTCTTGGAGGCTCCCAAGATTCTGAAAACGAACTTGATGGCAATGAAACTCATCGTCCAAGCAGTATTCGTGCCTTACTAACCATTCCAACACATAATGTTCATCGCTTATGGCGTAAGTTTGATAATTCAATTATGCGTCCAGTTTTTGGTGGTAGGGGATTTGTTCCAGTAGCTCCTACCTCGCCAACTGCGCGCAACGATAATCAACGGTGGCATTAA 1257 0.4208 MGVGKSLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDAASVVLFNAIKNFDVNQIDHRIGLHFFGNFLYLFIASTLLGVLAGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVLETFIFLYVGMDALDIEKWRFVSDRPRTSVTVSSVLLGLVLAGRAAFVFPLSFLSNLTKKSPSEKISFREQVIIWWAGLMRGAVSMALAYNQVRGTLLIRIHLSGHTELQTNAIMITSTITVVLVSTVVFGLMTKPLIRFLLPVSPPPKRKNSMANIDSSNNSPKSISVPFLGGSQDSENELDGNETHRPSSIRALLTIPTHNVHRLWRKFDNSIMRPVFGGRGFVPVAPTSPTARNDNQRWH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0302 418 MobiDBLite consensus disorder prediction 327 355 - -
Ssu4g0302 418 Gene3D - 8 60 - -
Ssu4g0302 418 Pfam Sodium/hydrogen exchanger family 7 313 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu4g0302 418 PANTHER SODIUM/HYDROGEN EXCHANGER 6 417 IPR018422 GO:0006812|GO:0015299|GO:0016021
Ssu4g0302 418 MobiDBLite consensus disorder prediction 326 364 - -
Ssu4g0302 418 PANTHER SODIUM/HYDROGEN EXCHANGER 2 6 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0302 Ssu-Chr4 5048561 5051501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0302 6 415 Antiporters AT3G05030 70.388 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0302 - - gmx:100787925 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0302 4 5048561 5051501 Ssu7g1650 7 34446833 34452425 PCT