Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0301 atgggCGCACAGAAGAAAAGCGGCACTAGGGTTTCAGAGGACCCCGACGAACTGGTGCGGGTTCCGTTGCAGGCCATTCTCTTGGCCGATAGTTTTACCACCAAGTTCAGACCTATCACGCTCGAACGCCCCAAAGTGCTGCTGCCGCTCGTGAATGTTCCGATGATAAATTACACCTTGACTTGGCTCGAATCCGCTGGCGTCGAAGAGGTTTTTGTTTTCTGCTGTTCTCATTCCAAACAGGTCGTTAACTACCTGGAGAAATCTGAGTGGTTCTCTCAACCAAATTTTACGGTAACAACTATAGAGTCGCAGAATTCCGTGAGCGCCGGCGATGCGCTACGCGTAATTTACGAGCGCAATGTGATACATGGAGACTTTGTCCTTATCAGTGGAGACACTGTAAGCAATATGTCGCTTAGTCAGGCACTTCTAGAGCataaagaaaggagaaagaaagataGTAATGCTGTAATGACTATGGTCATTAAACGATCAAAACCTGATCCAGCTATCCATCAGTCTCGACTCGGTACTGATGAACTTTTCATGGCCATTGATCCTAATACCAAGCAACTTCTGTATTATGAGGATAGGGCAGACCATTCAAGAGGAACTCTACATCTTGACAAGTCATTGCTTGTTGATAATCCTTCACTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGATATCTGCTCGCCAGAAGTCCTTAGCCTATTTACAGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGATACAAAATTTTCGTTCATGAAATCCACTCAGACTACGCAGCAAGGATTGATAATTTCCGAAGTTATGACACTGTCAGCAAGGATATAATTCATCGATGGACATATCCACTGGTACCAGATGTAATGAATTTTGGCAGCACAGCTACTAAACTTGAACGACAAGGAATGTACCGTGCTTCAGaAATATCACAATCACAGTCTGCTGTAATTGGCCCTTTCACTGTCATAGGATCTGGCACCAAAATTGGGAACAacactaaaatttcaaattctgttattGGAGAAGGATGTAAAATTGGGTCAAATGTTCTCATAGAGGGATGCTATATATGGGATAACATAAGTATAGAAGATGGCTGTAATCTCCAGCATGCAATTGTATGTGATGGGGTGATTATAAAGTCAGGGGCTGTTCTAGAACCTGGTGTTGTTTTGTCTTTCAAGGTTGTAGTTGGGCAGGAGTTTGTTGTTCCTTCATATTCGAAAGTATCTCTATTCCAGCAGCCAATTGAGGAAGATAGTGATGAGGAGCTTGAATATGCTGATAGTACTAGTGCCATCGGCAGCCAAGTGGGTAAGTCAGATGTAGAGATTGCTTCCCAAGTGGATAATACACATTTGAGTCCTGCTTCGGAGCTAGGTATGGGTGGGGTTGGTCATGTTTGGTCAACATGTGAAGGAGGCCATGAAGAAGAGTGGAGGCATTCAGTGGCACCTATTCCTAAAGATAAAATTCTGGAGGCAATTAAAGCTATGGAAGATGATCTGGAGTTAACTCATGATGACAGTTTTCTCCCACCTTCTGGAGAGCTGAAACCTAATTCTAATGATTCAGATGATGATGATCATGAAGATTCTAGAGATGACTCTTATTACTTTGAGAAAGAGGTTGAAGCAACCTTTCTCAGGGCTGTGCATGAAAACATACAAGAAAGCCATTTGATCTTAGAAATCAACTCTTTGAAGTTGTCATACAATAAGCTAACTGCTGATTGTGCTGGAGCTGTATTTTATGCCATGATGAAGTATGCTTTAGACACCCCCCATAGTTCAGCTGACAGCTTGCTTCAAAATGTTCAGGTTGTATTTTCAAAATGGAAAAAGGTTCTTACATCCTATCTGACTGACATAGATGAGCAGATTGAAGTAATactaaaatttgaagaaatgtGTTCGGAATCTGCCAAGGAGTTTGCTCCATTGTTCACAAGGATTTTGCACCACTTGTATGATGAAGATGTTGTAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAAAAAGACGCTGACGAGGCAGATAAAGTTTTTGTTAAGCAagccaaaaaattaattcaaTGGCTAAAAGAGGCACCTGAAGAAGACGACGATGACCAGAACGAGTAG 2184 0.4075 MGAQKKSGTRVSEDPDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCSHSKQVVNYLEKSEWFSQPNFTVTTIESQNSVSAGDALRVIYERNVIHGDFVLISGDTVSNMSLSQALLEHKERRKKDSNAVMTMVIKRSKPDPAIHQSRLGTDELFMAIDPNTKQLLYYEDRADHSRGTLHLDKSLLVDNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGSTATKLERQGMYRASEISQSQSAVIGPFTVIGSGTKIGNNTKISNSVIGEGCKIGSNVLIEGCYIWDNISIEDGCNLQHAIVCDGVIIKSGAVLEPGVVLSFKVVVGQEFVVPSYSKVSLFQQPIEEDSDEELEYADSTSAIGSQVGKSDVEIASQVDNTHLSPASELGMGGVGHVWSTCEGGHEEEWRHSVAPIPKDKILEAIKAMEDDLELTHDDSFLPPSGELKPNSNDSDDDDHEDSRDDSYYFEKEVEATFLRAVHENIQESHLILEINSLKLSYNKLTADCAGAVFYAMMKYALDTPHSSADSLLQNVQVVFSKWKKVLTSYLTDIDEQIEVILKFEEMCSESAKEFAPLFTRILHHLYDEDVVEEDAILSWEDEKKDADEADKVFVKQAKKLIQWLKEAPEEDDDDQNE 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0301 727 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Ssu4g0301 727 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 14 303 IPR029044 -
Ssu4g0301 727 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 725 - -
Ssu4g0301 727 Gene3D - 546 724 - -
Ssu4g0301 727 SMART 542_3 633 720 IPR003307 GO:0005515
Ssu4g0301 727 Gene3D Hexapeptide repeat proteins 312 435 - -
Ssu4g0301 727 SUPERFAMILY ARM repeat 559 717 IPR016024 -
Ssu4g0301 727 MobiDBLite consensus disorder prediction 525 554 - -
Ssu4g0301 727 ProSiteProfiles W2 domain profile. 553 724 IPR003307 GO:0005515
Ssu4g0301 727 CDD W2_eIF2B_epsilon 559 722 IPR044123 GO:0005085|GO:0031369
Ssu4g0301 727 CDD LbH_eIF2B_epsilon 341 419 - -
Ssu4g0301 727 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Ssu4g0301 727 Pfam eIF4-gamma/eIF5/eIF2-epsilon 645 724 IPR003307 GO:0005515
Ssu4g0301 727 Pfam Nucleotidyl transferase 25 165 IPR005835 GO:0009058|GO:0016779
Ssu4g0301 727 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0301 1 717 Eukaryotic Initiation Factors Gene Family AT2G34970 64.917 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0301 K03240 - gmx:100784894 1332.39