Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0297 ATGGGGTGTGTGATTAGCAGGGAGGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTGAGTCTAAGAGGAAGGTTGATGGAGTGTCGGGGAGCAAGGGTGAGGTGGTAGAGGTTCAGAATGGTGAgagggagaaggagaaggagaagggtggtggtggtgaacgTGTGCAGCGGCCTCGGGGTGAGAGGAGGAGATCGAAGGCGAATCCGAGGCTGAGCAATCCGCCGAAGCATTTGCGGGGGGAGCAGGTTGCAGCTGGCTGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCGCTCAGTGGTTGGATTCCGCGAAAGGCCGACacctttgagaaaattgataaGGTGGAGCAACTGCACAAGATATACAAACTATGTGGTTCACCTTCCGATGAGTATTGGAAGAAGTCTAAGTTGCCTAATGCTACTTTGTTTAAACCACGAGAGCCATACAAGAGACGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATACACTTCTTGCAATTGATCCTGTAGAACGGAAAACTGCCTCAGATGCTTTAAGAAGCGAGTTCTTTACCACAGAACCTTATGCTTGCGATCCCTCTAGTCTTCCTAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAATGAGGAGACTAAGAGCAGCAGGCAAAGCTCAGGTTGATGGTCCAAAGAAGCATCGTACACGTGATCGTGCTGTAAAAGCTTTTCCTGCTCCTGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCGCCACATCAAGATGGACAACTTGGTTTTCCTTTGGGATCTTCACATCACATTGATCCAGATACTGTTCCTACTGATGTCTCTTTTACGTCAACCTCGTATACCTATTCAAAAGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAAAGCTGGTGACATTGGAGTGCCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATGCCCTCAAGGACAAgcttaaaggaaagaaaatcatAGCTTAG 1137 0.4485 MGCVISREVSKGIISEVKEEKGLSGESKRKVDGVSGSKGEVVEVQNGEREKEKEKGGGGERVQRPRGERRRSKANPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRETFKDFPPSALPLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQVDGPKKHRTRDRAVKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGKAGDIGVPKRKKHTAGDALDLSKPQKDALKDKLKGKKIIA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0297 378 MobiDBLite consensus disorder prediction 329 378 - -
Ssu4g0297 378 PANTHER OS01G0367700 PROTEIN 123 355 - -
Ssu4g0297 378 SUPERFAMILY Protein kinase-like (PK-like) 104 223 IPR011009 -
Ssu4g0297 378 MobiDBLite consensus disorder prediction 281 313 - -
Ssu4g0297 378 PANTHER CELL DIVISION PROTEIN KINASE 42 125 - -
Ssu4g0297 378 PANTHER CELL DIVISION PROTEIN KINASE 123 355 - -
Ssu4g0297 378 MobiDBLite consensus disorder prediction 43 75 - -
Ssu4g0297 378 MobiDBLite consensus disorder prediction 15 36 - -
Ssu4g0297 378 Gene3D Transferase(Phosphotransferase) domain 1 98 239 - -
Ssu4g0297 378 MobiDBLite consensus disorder prediction 343 378 - -
Ssu4g0297 378 PANTHER OS01G0367700 PROTEIN 42 125 - -
Ssu4g0297 378 MobiDBLite consensus disorder prediction 15 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0297 Ssu-Chr4 4976581 4981019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0297 121 240 Core Cell Cycle Gene Families AT5G10270 44.628 2.62e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0297 K08819 - gmx:100786837 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0297 4 4976581 4981019 Ssu7g1649 7 34389232 34394110 ECH
Ssu4g0297 4 4976581 4981019 Ssu4g0297 4 4976581 4981019 ECH
Ssu4g0297 4 4976581 4981019 Ssu7g1649 7 34389232 34394110 PCT