Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0281 atgGCATCTCAGCAACACGACGCCGTTTTCCGCGAAGAAGACAtggacgacgacgacgacgagtCTCAGGAGGACGAAGAATACGAGGAAGACGACGACGTCTTGGCCGACGACGAAGAAAACGAGCCCTCTCCCTCTGCCGCTCTCGCCGTCACCGTCGCCGTCCCCGGCTCCGCCGTCTCCAACGGCGGCGCCGCTCCAATTTCGACgcccaccgccaccaccatcgtcgtcAGCGACTCCTCCGATCAGAAGCGGCGGCGCGTGGAGCAAATCGAGGAGAAGAAGCCGCCGGTGGACGATTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCCTGCAAGGCTTCCTCGACTACACCTCGCAGCGAGGATCGTCTCACCACAACGACACCGCTCTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTGGATTTCAACAAGAACCAGCTCGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAGTTTTCCTTCAAGAGCGCGCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTCGCGCCAATCGGCGACAATTCCTTGGACGACGACGAAATCAACCCTAGCCCCAAccctaaccctaattctaaccTAAATCCGAACCTTAATTTTAGCCCCGTAATTCTCAAGAATGAAACGATTTTCAGGAATTCCGCGGAGAAGAAAACACCGAAGCGGCCTCGGCCTCGATCGGCGGTGAAAATCGAGTCAAATGATGGATCCGCGGCAAACAGAGATCATAATTGTATTAGCAATGCTACCGCTACTACTGTTACAGCTACTGCTACTACTAACGCTACTACTgttactactaataataataattgtaacagCGGTGGTTATAGCAATAACATACCGAGTGTGGTTGAAGAGACGGTGAGGAGTTGTTTGTCGCCTGTGTTGAAGGAGTTGGTGGCTGGGGCCATGGGAGGGCCGTTTGGGGCGAGAGGGTTTTCGTTGAACTTAAACCCTATGCCTTTTATGAATTTGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAGTGGAGGAAGCAACAGATTTTGGAGTTGGAAGTGTACTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCTATGGAGGAGTTGCGGTCAAATGGAGGAGGAGGTTGA 1224 0.4975 MASQQHDAVFREEDMDDDDDESQEDEEYEEDDDVLADDEENEPSPSAALAVTVAVPGSAVSNGGAAPISTPTATTIVVSDSSDQKRRRVEQIEEKKPPVDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNVAPIGDNSLDDDEINPSPNPNPNSNLNPNLNFSPVILKNETIFRNSAEKKTPKRPRPRSAVKIESNDGSAANRDHNCISNATATTVTATATTNATTVTTNNNNCNSGGYSNNIPSVVEETVRSCLSPVLKELVAGAMGGPFGARGFSLNLNPMPFMNLSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSNGGGG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0281 407 MobiDBLite consensus disorder prediction 213 229 - -
Ssu4g0281 407 MobiDBLite consensus disorder prediction 244 262 - -
Ssu4g0281 407 Coils Coil 154 174 - -
Ssu4g0281 407 PANTHER BNAANNG10740D PROTEIN 1 404 - -
Ssu4g0281 407 Pfam Protein of unknown function, DUF573 106 200 IPR007592 GO:0006355
Ssu4g0281 407 MobiDBLite consensus disorder prediction 81 100 - -
Ssu4g0281 407 MobiDBLite consensus disorder prediction 12 40 - -
Ssu4g0281 407 PANTHER BNAANNG10740D PROTEIN-RELATED 1 404 IPR007592 GO:0006355
Ssu4g0281 407 MobiDBLite consensus disorder prediction 244 276 - -
Ssu4g0281 407 MobiDBLite consensus disorder prediction 209 229 - -
Ssu4g0281 407 MobiDBLite consensus disorder prediction 1 100 - -
Ssu4g0281 407 Coils Coil 379 403 - -
Ssu4g0281 407 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0281 Ssu-Chr4 4580970 4582193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0281 1 407 GeBP Transcription Factor Family AT5G28040 43.290 6.23e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Ssu4g0281 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0281 - - gmx:100779712 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0281 4 4580970 4582193 Ssu7g1632 7 34006442 34007554 PCT