Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0280 ATGGCGGATAAGGCTGTGACAATCCGAACCAGAAAGTTCATGACAAACAGGCTTCTTTCCAGGAAGCAATTTGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTCTCCAAGGCTGAACTTAAGGAGAAGCTGGCTAGAATATATGAAGTGAAAGACCCCAATACTGTATTTGTCTTCAAATTCCGAACACATTTTGGAGGGGGCAAATCTACTGGTTTTGGTTTGATTTATGATACAGTGGAAAATGCCAAGAAGTATGAGCCCAAGTACAGGCTTATCAGGAATGGTCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATgaaggagagaaagaatagaGCTAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTTCTGATGCTGCCAAGGctggaaaaaagaaatga 414 0.3937 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARIYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0280 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ssu4g0280 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ssu4g0280 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Ssu4g0280 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ssu4g0280 137 MobiDBLite consensus disorder prediction 102 137 - -
Ssu4g0280 137 Gene3D - 1 132 - -
Ssu4g0280 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ssu4g0280 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0280 Ssu-Chr4 4569502 4571158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0280 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.879 4.86e-85 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0280 K02974 - gmx:100802918 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0280 4 4569502 4571158 Ssu4g0280 4 4569502 4571158 ECH
Ssu4g0280 4 4569502 4571158 Ssu7g1629 7 33986305 33987833 PCT