Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0278 ATGAATGGTGTGACACAGCTTCAAACATTAACAGATTCCTCTGCCTCTGCCTCCGAGTTTGTTGAACTTGATCCAACTGGCAGATATGGCAGGTACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAAGTCAAATTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGACTTTACTGTGAAATTCATCTCCTCAAGACGTTGAAGCACAGAAACATCATGAAATTTTACACATCTTGGGTCGATACTGCAAATAGGAATATCAACTTCGTCACTGAAATGTTCACTTCTGGTACCCTTAGACAGTATAGACAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCTCTATCTTCATAGCCATGACCCACCTGTGATCCATAGAGATCTCAAATgtgataatatttttgttaatggaAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTCCGCAAGTCTCATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCACCAGAAGTTTATGAAGAGTCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGTGTATTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGTAGCCATCCCGCACAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAAATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGACCGGTGGACAGTGGAACATTTGATGACTTGGGTCTTCTTATCCATCAGCCATTCTTTGATCTCCACCGGAGCTTTAGTAACATAAGTACTGAATACTCAAATGGCTTTGAATATGAAGGAGACTGGTATTCTCATCCAGCTGAGTTTGAACCTAGTGGAATCGAACTTTTCGAGTGCCATGATGATGAAGCCTCCGAAGATGTTGACATAAGCATCAAAGGCAAGAGGAAAGATGACTGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGCCATATTCGAAATATTTATTTCCCATTTGATATAGAGATGGACACAGCATTAAGTGTAGCGACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAGCCAGGACCAGGAATTGAAGAAACTAACcgttttgtaaataattttttttgtcacaattGTGCGTCTAATCATACTTCTGGTGGCAATGTTATGGATTTTCTTTCACATAATCAAGGTGGAAAGAACTCACAGCTTCCTCAATGCTGTACTCATGGATGTACTTCAATGCATGGGCGGTTTGAGGAGATTACCTTCCAATCTGAATATGACAATCATGTTAGAGGGGATGCACTTATCGAATCAAACCAATCAGACTGCTTGCAGAATCAAGAGTTATGGAATCATCATGAAAGTTATGAACCGAGTCCAATAGAGTCTGATCAAAGCCATTCTGATGAACAATATGAACAAATAGATAAATTAGTGCTGGCAGAAGACAAAGGAAAGGGTATTTGGGAAAACAAGTTTGCACATGATGCAGGAAACTCCTCACGAAGTTTATCAGGAAATGATGTCTCTACTAGGGGTTTGTTATGTTGTGGCCCTGAGAATAAATATGAGAAAGATGTTCAACAAGAATTGAGATCGGTCAAAGCAAAACACCAAATGGAGTCAAGGGAACTTAGGAATAAACGGTTTGGTATAGCAGCTAAATCTTCACATACTAGTAACAGAGAGCACAAAACAGAACAAGGCATCATGCCACCTTCACTGACAGAAACAATAAACGGAGTGGACCATGGGATTCACTTGAAATCCTTAGGTAATTGCTGGAATTATGATTCCAGTTGCCATTCTCAAGTCCAAAAGAACCACACCAATTTGGACATCCAAAGGGCCCAAAATTGTGAGGTCATGTGTTCTCATGAAGAAGGTATGGTTACTTCAAAGAGTTTTTACACAGGGTTGCTTCCAGACACTCTACACAAGGACAGTTTCCCTTCCCGTTGA 2220 0.3991 MNGVTQLQTLTDSSASASEFVELDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSARELLNDPFLQIDDYEYDLGPVDSGTFDDLGLLIHQPFFDLHRSFSNISTEYSNGFEYEGDWYSHPAEFEPSGIELFECHDDEASEDVDISIKGKRKDDCGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWKPGPGIEETNRFVNNFFCHNCASNHTSGGNVMDFLSHNQGGKNSQLPQCCTHGCTSMHGRFEEITFQSEYDNHVRGDALIESNQSDCLQNQELWNHHESYEPSPIESDQSHSDEQYEQIDKLVLAEDKGKGIWENKFAHDAGNSSRSLSGNDVSTRGLLCCGPENKYEKDVQQELRSVKAKHQMESRELRNKRFGIAAKSSHTSNREHKTEQGIMPPSLTETINGVDHGIHLKSLGNCWNYDSSCHSQVQKNHTNLDIQRAQNCEVMCSHEEGMVTSKSFYTGLLPDTLHKDSFPSR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0278 739 CDD STKc_WNK 28 287 - -
Ssu4g0278 739 ProSiteProfiles Protein kinase domain profile. 30 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0278 739 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 434 IPR024678 GO:0004674|GO:0005524
Ssu4g0278 739 SUPERFAMILY Protein kinase-like (PK-like) 33 288 IPR011009 -
Ssu4g0278 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Ssu4g0278 739 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 8 727 - -
Ssu4g0278 739 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0278 739 Gene3D Phosphorylase Kinase; domain 1 14 111 - -
Ssu4g0278 739 Gene3D Transferase(Phosphotransferase) domain 1 113 292 - -
Ssu4g0278 739 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 727 - -
Ssu4g0278 739 SMART serkin_6 30 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0278 739 Gene3D - 377 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0278 Ssu-Chr4 4545005 4548069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0278 18 506 MAP Kinase Kinase Kinase AT3G22420 58.601 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu4g0278 Pkinase 7.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0278 K08867 - gmx:100790554 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0278 4 4545005 4548069 Ssu4g0278 4 4545005 4548069 ECH
Ssu4g0278 4 4545005 4548069 Ssu7g1628 7 33963658 33967001 PCT