Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0269 atgTTCGATGGAGCACCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTCCACTTGTCTTTCCCTCTCCATGCCTCTCCAACCCCAACTACCTTCCTTCCCTTTGATCCCTATAACCCTTCTCATCCCCACTTGCCACTCCAAACCAATCTCTTGCACCCATTGCACCCCCCTTCTCCCACCCACAAACATGAACAAGACAAGGAACCAAATACCATCAACAACGTTGAGATTGAAAGAGATCAAAGACAGCTACCAGAGTTAACCGATTCCTGGACCAACGATGAAGTGCTTGCACTTTTCAGAATCAGATCTAGCATGGAAAATTGGTTCCCAGAGTTCACATGGGACCATGTCTCAAGGAGGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTAGATATTTCGACAACATGAACTACGGCAAGAACAATTACCGGTTCCTCAGCGAGCTGGAGGAGCTTTGTCACGGTGATCAAAACCCTGATCCCGGTGGTGATGCTGATGCTGGTAATGGGGTTGTGAGGAGTGAAAAGACCCACCACCCAGGAGGAGACAACATGGGCCACCATCACGCGTTGGAAGAAAATTCCAGAGACATGGAAGCAACAGCGACCAAACAACGTGATGGAAGTGACAAGGTAGTGGTGGAAAAGTCAAAGGAGCGCAAGAGGAAGCGGCGCGACAGGTTTGAAATGTTCAAGGGCTTTTGCGAGAGTGTTGTGAACAACATGATGGCTCAGCAAGAAGAGATACACAACAAGCTCCTCGAGGACATGGTGAAGAGGGACCAAGAGAAGTTCGCGAGAGAGGAAGCGTGGAAGAAGCAAGAGATGGATAGGATGAACAAGGAGCTTGAGATCGTGGCACAAGAGCAAGCTATTGCCGGGGATAGACATGCCACCATAATTGAATTCTTGAAGAAAtgtgcaacaacaacaacaacttcatCATCCCCTGCAAGCCAAAATGCCAACTACTACAAAACAAATGGCTCAAATATTCCAAATTGTCCACGCACtacttctccttctccttccccATTGCACCCCCAAAACCCTAATAATCCTTCCCGTGAAGACAACAATCTTGATCCAACACCTTCTTCTAAAATGATTCTAAGTCATGATCAAACTACGTTGGGAGCAGAAAACCCTAGCACAAGTGACTCATTACTATTGCAAGTTCCTTCTTCCTCCAATTCCTCCCCAGCTCCCCACAACCCTAGTTCTTCACTCAATAGTCATAATAATGTTATTGCTCCATTAGAGTCAAATTCAGTTTCGACATATAAGGCCACGTCAACAACCCCTACGGTCACCAGTGAGAATTCGAAAGAGGATGTTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCGCTGATAAACCTGAGGTGCACAAATCtgagtaacaacaacaacaatgaagaGAAGGAGGGAAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGCTGGGATACAAGAGGAGTGCGAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACGAAGGATGTTAATAAGAAAAGGTCCCTTAACTCTAGGACTTGTCCCTATTTCCATCAACTGAGCTGTTTGTACGGTCAGGGAAAAATTGAGCCACAATCTGAAAGGGAAGGGAACTGCTTGAATCCGACCGCGAATTCCGGCCAAGTGCCACCAGATGATCGAGTCCAAGCTGATGAGTCTTCTCAAGTGGGGTCTGGTGGTGTAGCTCAGTATGCATGTTGA 1821 0.4519 MFDGAPDQFHQFIAPRTTLPLHLSFPLHASPTPTTFLPFDPYNPSHPHLPLQTNLLHPLHPPSPTHKHEQDKEPNTINNVEIERDQRQLPELTDSWTNDEVLALFRIRSSMENWFPEFTWDHVSRRLAELGFKKSAEKCKEKFEDESRYFDNMNYGKNNYRFLSELEELCHGDQNPDPGGDADAGNGVVRSEKTHHPGGDNMGHHHALEENSRDMEATATKQRDGSDKVVVEKSKERKRKRRDRFEMFKGFCESVVNNMMAQQEEIHNKLLEDMVKRDQEKFAREEAWKKQEMDRMNKELEIVAQEQAIAGDRHATIIEFLKKCATTTTTSSSPASQNANYYKTNGSNIPNCPRTTSPSPSPLHPQNPNNPSREDNNLDPTPSSKMILSHDQTTLGAENPSTSDSLLLQVPSSSNSSPAPHNPSSSLNSHNNVIAPLESNSVSTYKATSTTPTVTSENSKEDVGRRWPRDEVLALINLRCTNLSNNNNNEEKEGNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIEPQSEREGNCLNPTANSGQVPPDDRVQADESSQVGSGGVAQYAC 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0269 606 MobiDBLite consensus disorder prediction 327 354 - -
Ssu4g0269 606 MobiDBLite consensus disorder prediction 566 606 - -
Ssu4g0269 606 CDD GT1 465 534 - -
Ssu4g0269 606 Pfam Myb/SANT-like DNA-binding domain 465 553 IPR044822 -
Ssu4g0269 606 Pfam Myb/SANT-like DNA-binding domain 94 157 IPR044822 -
Ssu4g0269 606 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 600 - -
Ssu4g0269 606 MobiDBLite consensus disorder prediction 569 583 - -
Ssu4g0269 606 Coils Coil 473 493 - -
Ssu4g0269 606 MobiDBLite consensus disorder prediction 368 458 - -
Ssu4g0269 606 MobiDBLite consensus disorder prediction 327 466 - -
Ssu4g0269 606 Gene3D - 96 152 - -
Ssu4g0269 606 Gene3D - 467 532 - -
Ssu4g0269 606 MobiDBLite consensus disorder prediction 188 236 - -
Ssu4g0269 606 PANTHER - 13 600 - -
Ssu4g0269 606 MobiDBLite consensus disorder prediction 170 236 - -
Ssu4g0269 606 ProSiteProfiles Myb-like domain profile. 466 527 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0269 Ssu-Chr4 4388587 4390845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0269 96 559 Trihelix Transcription Factor Family AT5G28300 41.667 1.73e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu4g0269 Myb_DNA-bind_4 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0269 - - gmx:100801868 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0269 4 4388587 4390845 Ssu4g0269 4 4388587 4390845 ECH
Ssu4g0269 4 4388587 4390845 Ssu7g1620 7 33860375 33862546 PCT