Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0267 ATGAACACGCTACATGTAAATTTTCAGGCAAGGCGAGCATTGCATGCTTTAAAGGGATTAGTCAAGTTACAGGCACTAGTGAGGGGTCACCTTGTAAGGAAACAAACAACTGCTACACTGCGTGGCATGCATGCGTTGATGGCCATACAAGTTAGAGCCCGAATTCACAGAATTCAGATGGCAAAGGAAGCAAACCTCCTCGGAAAACAGCCTCCGCAACATAGCGAAGTTCCACACTTCAGAGATCTCAtaacagaagaaaataaaGATTCAAAGGATATGAGTGTGGAAGAAATGTTGGAGGTTTTGAAAAGCAGAAGTGGCCCTCTAGATGGTTCACATGCTAAGAGCAGAGAGCGTGATTCCATGACATACTATTCGAAGCATCTGCCGGTTGTTTCTAAACGAGAAAATCAATACAAGAACACTCTAATCATAGAACCAAACAGCCCAGGAAACTACCGGGCCATGTCTGAATTTAACCCAACGACAATGACCTTATCAACTTCTCAGCGCCATTCAGTGCCTCACCGCCAATCATGGTCCCCAAATTACATGAACAAGACAGAATCTTCAATGGCTAAAGCAAGATCGCAGAGTGAACCCAAACAACGACCCAAACGGGCAATGAGGCACAAAGGCAAGTCTGTGGAATCCCCATTGAATGGTCCAAGACAAGATCTTCTCTCAAACTCGTTACGCTTCGATCCTGGAAGCCTGGACCATTGGGTTATCGATCTTCATGGGTCAATGAAGGACCACAGGCGCGATTCCTTTGGCAGCAGTTCGGTTACTACTGATTCCTATTATTGA 813 0.4477 MNTLHVNFQARRALHALKGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRARIHRIQMAKEANLLGKQPPQHSEVPHFRDLITEENKDSKDMSVEEMLEVLKSRSGPLDGSHAKSRERDSMTYYSKHLPVVSKRENQYKNTLIIEPNSPGNYRAMSEFNPTTMTLSTSQRHSVPHRQSWSPNYMNKTESSMAKARSQSEPKQRPKRAMRHKGKSVESPLNGPRQDLLSNSLRFDPGSLDHWVIDLHGSMKDHRRDSFGSSSVTTDSYY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0267 270 ProSiteProfiles IQ motif profile. 18 45 IPR000048 GO:0005515
Ssu4g0267 270 MobiDBLite consensus disorder prediction 168 233 - -
Ssu4g0267 270 Pfam Protein of unknown function (DUF4005) 162 213 IPR025064 -
Ssu4g0267 270 PANTHER IQ-DOMAIN 5-RELATED 10 257 - -
Ssu4g0267 270 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 10 257 - -
Ssu4g0267 270 MobiDBLite consensus disorder prediction 168 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0267 Ssu-Chr4 4368400 4369419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0267 10 222 IQD Protein Family AT4G14750 35.160 4.52e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0267 - - gmx:100781320 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0267 4 4368400 4369419 Ssu4g0267 4 4368400 4369419 ECH