Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0265 ATGGAGAGCGCACTGCCCTGTTCTGGCGATAAAACCTTACAAGAATTCTTCAAAGTTTTCCTGCTCCAGACAGGTTCTTCCCAGTTGCAAATACCTACATCTTTCACCAAGTTCTTCAATGGAACCACACCATGCAAGGTCACTCTTGTAGATCACGATGGAAAATCTTGGGATGTTTACTTGGAGAGAATCGAGGGTCGCTTGGTTTTGAAAAATGGGTGGCAGCAATTTGCCAGGGAGAAAGATTTAGAAGAAGGGGACTTCTTGGTTTTTCAGTATGATGGCTGGTCTACATTTAATGTGAAGATATTTTCGAAAACTGGATGCAGGAAAGTGGCTGCACCTGCACCTGCAAGTTGTGGAAAAATTGTTCCCATTGTGATTTTGGATGAAGATTCTGATTCGCGTTGTAATAAAACCCAGTGCGGTCGTAAACGGAAACACTCACCGTCAAGtctcaaaataaatgagaaatcaGTGTTAGAGGGTCCATGCCAATCCGCAGATGCAGCTCGGTGCAAATCAGAAAGAGTTCATGAAGAAAATGATAACCACCATGAGAAGAAAGCTGGTCTGACAAACTTGGTTCCATTGCAGGATCCTCATTTTCAGATATATTTTAATGCCCCCTGGAGACTGAAAAAAGTGGAAGTTCCTAGAAGAGTGCTGAGTAAAATGAATATCAAGCTGATTCCAAAGATAAGTCTCAGAGATGAGAATGACAAATTATGGCCGGTGGCGATCATTACCACTGATTACGGCCATCGTCGTCATTTTTTGGGAGGTGGATGGTCTGATTTCAAGCGGAGTAACAATATTCAAGAAGGGCACCTATGTGACTTTCAGTTTGTTCTTGACAAAGCAAACGTGGCCCAAGAACTGCTTGTGCGCGTACGTTCCAAATGCCCAATACGTTGGGTGGGCTGCAAATAA 933 0.4266 MESALPCSGDKTLQEFFKVFLLQTGSSQLQIPTSFTKFFNGTTPCKVTLVDHDGKSWDVYLERIEGRLVLKNGWQQFAREKDLEEGDFLVFQYDGWSTFNVKIFSKTGCRKVAAPAPASCGKIVPIVILDEDSDSRCNKTQCGRKRKHSPSSLKINEKSVLEGPCQSADAARCKSERVHEENDNHHEKKAGLTNLVPLQDPHFQIYFNAPWRLKKVEVPRRVLSKMNIKLIPKISLRDENDKLWPVAIITTDYGHRRHFLGGGWSDFKRSNNIQEGHLCDFQFVLDKANVAQELLVRVRSKCPIRWVGCK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0265 310 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 11 289 - -
Ssu4g0265 310 CDD B3_DNA 212 300 IPR003340 GO:0003677
Ssu4g0265 310 SUPERFAMILY DNA-binding pseudobarrel domain 199 284 IPR015300 -
Ssu4g0265 310 Gene3D - 8 109 IPR015300 -
Ssu4g0265 310 Gene3D - 196 299 IPR015300 -
Ssu4g0265 310 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Ssu4g0265 310 ProSiteProfiles B3 DNA-binding domain profile. 218 300 IPR003340 GO:0003677
Ssu4g0265 310 SUPERFAMILY DNA-binding pseudobarrel domain 15 109 IPR015300 -
Ssu4g0265 310 CDD B3_DNA 16 105 IPR003340 GO:0003677
Ssu4g0265 310 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Ssu4g0265 310 Pfam B3 DNA binding domain 216 300 IPR003340 GO:0003677
Ssu4g0265 310 PANTHER B3 DOMAIN-CONTAINING 11 289 - -
Ssu4g0265 310 SMART B3_2 203 302 IPR003340 GO:0003677
Ssu4g0265 310 SMART B3_2 17 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0265 Ssu-Chr4 4354164 4357458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0265 15 300 B3 DNA Binding Superfamily AT5G66980 29.841 2.24e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu4g0265 B3 3.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0265 - - gmx:102669908 454.521