Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0261 ATGAACAAAGGAGACAATGCGTGGCAGCTTATGGCAGCGACGGTGGTGGGTCTCCAAAGCATTCCGGGGCTGGTCATTCTGTATGGAAGCCTGGTGAAGAAGACATGGGCCATTAACTCTGCTTTCATGGCCTTTTATGCCTTCGCGGCCGTTCTTCTTTGCTGGGTTGCGTGGGGTTTCCGCATGTCATTCGGCGAGAAGATGGTTTTCTTCCTGGGGAAACCCGGGGTGGCGTTGGACGACAAGTTCCTTCTGGGGAAAGCTTTTCTGGGGCTCTTTCCCACTGCTACCATGGTGTTTTTTCAGGGCGTCTTTGCAGGGATTACTTTGATCTTGATAGCCGGTGCCTTACTTGGGAGGATGAATTCTCGGGCCTGGATGCTCTTTGTGCCTCTTTGGCTTACTTTTTCGTACACCGTCACTGCCTTCAGCATTTGGTGCCCCGATGGGTGGTTGGCAAAGCTTGGAGTTATTGATTTCTCTGGGGGATACGTTATTCACCTCTCCGCTGGAGTTGCTGGTTTTACTGCAGCTTATTGGGTGGGTCCACGATCTGAGAAGGACAGAGAAACGTTCCCATCAAACAACATGATTGTGGTGCTTGCAGGCGCAGGTCTGCTTTGGATGGGTTGGAGTGGGTTCAACGGTGGAGGACCGTTCGCGGTGAGCACGGTGGCATCTCTGGCCGTCCTTAACACACACGTGTGTGCTGCCGCTAGCATCATCGTCTGGGTCCTACTCGACACTTTCTACTTTGGTAAGCCCACTGTGTTTGGCGCCGTACAGGGCATGATCACTGGGCTCGTTTGCATCACACCTGCCGCAGGAGTTGTGCAGGGGTGGGCAGCGATCTTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGGTGCTCCATAAGAAGCTCCCCTTCTTAAACCAAATCGACGACCCCATGGCGGTGTTCCACACCCACGCCGTCGCCGGTGCTCTCGGCGGCATTCTCACCGGCCTCTTTGCCGTCCCTAAACTGTGCCGTCTCTTCTACATGGTGCCCGATTGGGAAAAATACATTGGCCTCGCCTATGGCCTTCAGAACGGTGCAACTCGAGCGGGTTTAAGACAAATGGCTATCCAAGTTGGGGCCATGGTTTTCGTCATTATCTTCAACTTTGTTACGACGAGCTTGATTTGCTTGCTCGTGGGGGTCATAGTACCACTGAGGCTTGACACCGATGCGTTGCAAATGGGTGACATGGCAATGCATGGAGAAGAGGCTTTCGCATTGTATGGTGAGCCTGCAAAATTTCAGAACCTGAAgcacaataaaatttatgacaCTCGAGACTTTTCGTACGTTAGCGAGTCAAGGTCATTAGGCGAGCTACAAATGGTATAA 1386 0.5188 MNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMVFFLGKPGVALDDKFLLGKAFLGLFPTATMVFFQGVFAGITLILIAGALLGRMNSRAWMLFVPLWLTFSYTVTAFSIWCPDGWLAKLGVIDFSGGYVIHLSAGVAGFTAAYWVGPRSEKDRETFPSNNMIVVLAGAGLLWMGWSGFNGGGPFAVSTVASLAVLNTHVCAAASIIVWVLLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMVLHKKLPFLNQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATRAGLRQMAIQVGAMVFVIIFNFVTTSLICLLVGVIVPLRLDTDALQMGDMAMHGEEAFALYGEPAKFQNLKHNKIYDTRDFSYVSESRSLGELQMV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0261 461 PANTHER AMMONIUM TRANSPORTER MEP2 1 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu4g0261 461 TIGRFAM amt: ammonium transporter 5 422 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu4g0261 461 PRINTS Rhesus blood group protein signature 229 251 IPR002229 GO:0005887
Ssu4g0261 461 PRINTS Rhesus blood group protein signature 284 302 IPR002229 GO:0005887
Ssu4g0261 461 PRINTS Rhesus blood group protein signature 198 216 IPR002229 GO:0005887
Ssu4g0261 461 PRINTS Rhesus blood group protein signature 102 118 IPR002229 GO:0005887
Ssu4g0261 461 Pfam Ammonium Transporter Family 7 423 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu4g0261 461 ProSitePatterns Ammonium transporters signature. 159 184 IPR018047 GO:0008519|GO:0016020|GO:0072488
Ssu4g0261 461 PANTHER AMMONIUM TRANSPORTER 1 461 - -
Ssu4g0261 461 Gene3D Ammonium transporter AmtB like domains 1 440 IPR029020 -
Ssu4g0261 461 SUPERFAMILY Ammonium transporter 2 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0261 Ssu-Chr4 4260029 4263984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0261 96 455 Inorganic Solute Cotransporters AT2G38290 54.247 4.48e-129 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0261 K03320 - gmx:100782944 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0261 4 4260029 4263984 Ssu4g0261 4 4260029 4263984 ECH