Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0258 atgaatatggaAAGGGTGTTGTCAATGGATGAAATATCGGAGCAGTATTGGGTGGCAGCGAGGAAGGAATCGTGCAAGTCAAAGTCAAACATGAACCGGAGCGATTCGGAGTGGGCCTTTCAGCAGTTCTTACAGGAAGCTGCTTCTTCTTCGTCTTCTGATGATGTTAAACTCGAAAAGGATCCCAACATTGACATCCCTGGAGCTGTAAATGATGATTCCGAGGACTACCACACTATTCTAAAGACCAAGCTTAATCTCGCATGCGCCGCTGTCGCTTTGACTCGGGGATCTTTggtcaaatctcaaaatcctgACAGTGGATCACAGGCATCTAATCCTTCTGAAGTTGGATTGCAGGCTACCTTAAAAGGATCTGGCCCTTTTGGAAATGATCCATCTAAATTACAGCATAACGATGTCAAAGCACCAATTGGGGTTCCTTCGTCACCTTCCATGCAAAAGAAACCTGCTGTTGCAATGAGGCCAACGATGAGTGGATCATCAAGAGAACAATCAGATGACGAGGAAGCGGAGGGAGAGATTAATATGACTGAAAACATGAACCGTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCGAATAGGGAGTCTGCTAGACGctcaagaagaagaaagcagGCTCATTTAACTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGCGAAAATTCTTCATTGTTAAAGCGCTTAACGGATGTGAGCCAGAAATACAATGATGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTACTGGGTTGAACCCAATGTTTAATGCCATGACTGAGATGTCATCAATGGGAATGTCATTGTTTGATGAAAGTCCTTCTGAGACATCAACTGATGCGGCTGTTCCTGTGCAAGAAGACCCAAATCATCACCTTTGTCAACCCTCTTCTAATAATGGGTTGGGAGGCATTTCTTCAATTGAAACTGTGCAGCAGAACGTTGCAGCAGTGGTAGGTGGGAACAAAACGGGGCGAACAACTTCCCTGCATAGAGTGGCTAGCCTGGAACATCTTCAGAAGCGGATTCGTGGAGGTGCAGATTCACGTGGAACTCCTTCTAATGGAGAGCAATAA 1158 0.4326 MNMERVLSMDEISEQYWVAARKESCKSKSNMNRSDSEWAFQQFLQEAASSSSSDDVKLEKDPNIDIPGAVNDDSEDYHTILKTKLNLACAAVALTRGSLVKSQNPDSGSQASNPSEVGLQATLKGSGPFGNDPSKLQHNDVKAPIGVPSSPSMQKKPAVAMRPTMSGSSREQSDDEEAEGEINMTENMNRADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVSQKYNDAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFNAMTEMSSMGMSLFDESPSETSTDAAVPVQEDPNHHLCQPSSNNGLGGISSIETVQQNVAAVVGGNKTGRTTSLHRVASLEHLQKRIRGGADSRGTPSNGEQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0258 385 Pfam bZIP transcription factor 192 244 IPR004827 GO:0003700|GO:0006355
Ssu4g0258 385 PANTHER BASIC LEUCINE ZIPPER 63 3 366 - -
Ssu4g0258 385 PANTHER BZIP TRANSCRIPTION FACTOR 3 366 - -
Ssu4g0258 385 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
Ssu4g0258 385 Pfam Basic leucine-zipper C terminal 261 374 IPR020983 -
Ssu4g0258 385 Gene3D - 193 247 - -
Ssu4g0258 385 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 246 IPR004827 GO:0003700|GO:0006355
Ssu4g0258 385 Coils Coil 252 272 - -
Ssu4g0258 385 MobiDBLite consensus disorder prediction 100 181 - -
Ssu4g0258 385 SUPERFAMILY Leucine zipper domain 194 244 IPR046347 GO:0003700|GO:0006355
Ssu4g0258 385 MobiDBLite consensus disorder prediction 48 70 - -
Ssu4g0258 385 MobiDBLite consensus disorder prediction 100 120 - -
Ssu4g0258 385 Coils Coil 203 237 - -
Ssu4g0258 385 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0258 Ssu-Chr4 4219723 4226291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0258 3 283 bZIP Transcription Factor Family AT4G02640 40.308 1.99e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0258 bZIP_C 1.7e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0258 4 4219723 4226291 Ssu4g0258 4 4219723 4226291 ECH
Ssu4g0258 4 4219723 4226291 Ssu7g1613 7 33691586 33695695 PCT