Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0255 ATGACAAGTGTTGTGGAGGCAGAGCGAGACAAGTACAACATGATCAATTTTGAAGAAACCGAGTTGCGACTCGGGTTGCCACTGAGTGGAAACGAGGGCGAGTCCACGCTCAAAAACACTTGCAGTGCCTTTACTGGGAAGAGGGGGTTTTCGGATACAAGCAGTGCTAGCGTCGATTTGAAGCTTAACCTTTCTTCAACCTCAAATAATGTCTTGGCCTCAGCCTCTTCTGACGTGGCCAAAGAGAAGATCACTGCTGCTAACTCCACTGCACCATCACCCCCTCCTGCTCGCGCTAATGACCCAGCAAAGCCACCAGCAAAGGCACAAGTGGTGGGTTGGCCACCGGTGCGGTCATTCAGAAAGAACATTGTTAATACTAACGTTCAAAGGAGTAACAACAATGAATCCGAAAAAGCCGCCACAAGTAGCAGCAACAATGCTAACATGGGAGCAGCTTTCGTGAAAGTGAGCATGGATGGTGCTCCCTATCTACGCAAGGTGGATTTGAAGTTGTACAAGAGCTACCGAGAGCTCTCAGATGCACTGGCTAAAATGTTCAGTTCCTTCACCATTGACAAATGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGAGCAAATTGATTGATCTTCTGAACGGCTCTGATTATGTACCAACTTATGAAGACAAAGATGGGGACTGGATGCTCGTGGGTGACGTACCGTGGGAAATGTTCGTGGAATCATGCAAGCGCCTGCGCATAATGAAAGGATCTGAGGCAATTGGGCTCGATGGATCCGGTTGGTTGTGGAAGCAGATACATAAGATCCATGAACATAGTGATAAGGACTGTGGCTCACATCTTGCGGGACTGCCCCTTTGCGGCTGTAGTCTGGTACAAAGTAAGTCAGGGACCTCTTCCGCAAAGATTTTGGGATGCGGAAGTGGATTATTGACTAGAGGAAAACTTAAAAGATGGTGCGGTTGGACAAAGGACCTTTGgagttattattttgtgtacTCCCTGGATCGGATTTGGCTTGCTCAAAATAGCCAAATGTTTGATAAGAAGCAATTGTTGGTGGGGAGTGTTTGTTTGGACGTGGAGAGGGAAATTAACAATACAGGAGCGTTTGGAGGTTGTTCCTTGAATCACATTCTGCGCGAGGCTAACCAGGTGGCGGAGGCGCTTACCAAGCATGGGCGGATTACTGTTATCATACGGTGTTACTTACTTCTAATTCTGCTTTTGTCTCTTACCCTTTTGGGTGACATTTGCCTTTGGTAA 1272 0.4678 MTSVVEAERDKYNMINFEETELRLGLPLSGNEGESTLKNTCSAFTGKRGFSDTSSASVDLKLNLSSTSNNVLASASSDVAKEKITAANSTAPSPPPARANDPAKPPAKAQVVGWPPVRSFRKNIVNTNVQRSNNNESEKAATSSSNNANMGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALAKMFSSFTIDKCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLDGSGWLWKQIHKIHEHSDKDCGSHLAGLPLCGCSLVQSKSGTSSAKILGCGSGLLTRGKLKRWCGWTKDLWSYYFVYSLDRIWLAQNSQMFDKKQLLVGSVCLDVEREINNTGAFGGCSLNHILREANQVAEALTKHGRITVIIRCYLLLILLLSLTLLGDICLW 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0255 423 Pfam AUX/IAA family 19 258 IPR033389 -
Ssu4g0255 423 SUPERFAMILY CAD & PB1 domains 146 251 - -
Ssu4g0255 423 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 263 IPR003311 GO:0005634|GO:0006355
Ssu4g0255 423 Gene3D - 146 262 - -
Ssu4g0255 423 ProSiteProfiles PB1 domain profile. 152 252 IPR000270 GO:0005515
Ssu4g0255 423 MobiDBLite consensus disorder prediction 86 111 - -
Ssu4g0255 423 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0255 Ssu-Chr4 4141532 4148142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0255 132 255 B3 DNA Binding Superfamily AT2G46530 32.258 9.70e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g0255 AUX_IAA 2.7e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0255 K14484 - gmx:100796888 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2173 7 42714875 42717672 Ssu4g0255 4 4141532 4148142 ECH
Ssu4g0255 4 4141532 4148142 Ssu4g0255 4 4141532 4148142 ECH