Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0250 ATGCATTCCGGTGCAAAAGGTGTCTTGCTTTCTCTTGTCTGTACCTTAGTTTTGTTGAATGGCATTCATGCTGCATCGAATGAGGAGCCCGGGTCTTTGTTCTTGGGTTGTGGGTTGGATGAAGGGGGTGCCAAAGATGCTGATGGAAGACAATGGAGTCCTGATAACAAGTTCCTTGGGTCAGCAGGTGATTCAATCACATCCAAAGCCTCCCACCAAGACCCTTCCCTCATGTCTGAGGTTCCATACATGTCAGCACGTGTTTTCAAGTCCGAGACAACATACAAAGTCCCCGTTAAACCTGATAATCGCTATTGGCTCAGGCTCCATTTTTACCCCTCTCTTTATGGCAGTTTTGATCCCTCTAAATCCTATTTCTCCGTGACTGCAAATGGGGTTACCCTCCTCACCAATTTCAGTGCCTCAATCACTTGCGAGGCCCTCTCACAAGCCTACATTGATAGAGAGTACTCCCTTGCACCTTTGAATTCAGATACTTTGACTCTCACTTTCAAGCCTTCTGATACATACGATGGTGCATTCGCTTTTGTCAATGGCATTCAGCTGATCCAAATGCCCGAGTTGTTTCAATCTGCAGTAATGGTAGGGTATGCTGAGCGAACCATGGATGTCAGGAGCTTGAATTTGCAAACCATGTTTAGACTAAACGTTGGTGGGCAGTACATATCTCCAACGCAAGACTCTGGCCTTACAAGGATGTGGTATGACGACACACCTTACCTTTATGGTGCAGCCGCTGGTGTGACCAACCAAGCTGAGAAGAATGTCTCAATCGACTACCAGACCATGCCACAGTACATTGCTCCTCCTGATGTCTACTCCACATCAAGATCAATGGGGAAAGATAAGGATGTCAACATGGGCTACAATCTCACGTGGATCTTCCGAGTTGATCCCAATTCCATGTACCTTGCAAGGTTGCATTTCTGTGATTACCATTACTCCAAGGTCAACGAGATTGTTTTCGACATCTTTGTCAACAACCAAACGGCAGAGGCTCAAGCTGATGTGATTGGGTGGACAAGAGGTAAGGGAGTGCCAACTTATAAGGACTATATGATATATGTCCAAGATGGGGAGGGTGATGAGCAGCTTTGGCTTGCTCTTCACCCTGCACCTGAGTCAAAGCCTGAATACTATGATGCCATACTCAATGGGGTGGAGATATTCAAGCTCAATGACACAAACTTGTCTGGTCCCAATCCTCAGCTTTCGGACATGCTCCTCAAGCAGCATGAGGAGGAAGAGGGTTTCAGTGACCAAAAAGCATATAATAAGCATGCTGTTATTGGTGGAGCTGCTGGAGGTGCTGCTGGTGTTGCTTTTATGGCTGTGATATGCGTTGCTGTGTACAACAAGAAGAAGAGAGTTCCAGGTTCAGAGGGTGGTTACTCAAGCTGGCTCCCCATCTATTTGAACTCACGTGGCAGCAAATCCACCACGTCTGGGAAGAGCGTTAGCAGTGCCACCTTGTCCACCATGGCTCAAGGTCTTTGCCGCTATTTCTCCTTGCAAGAGATGAAGCATGCAACCAAGAATTTTGATGAGTCCAACGTCATTGGGGTTGGTGGATTTGGAAAGGTGTACAAGGGTGTCATTGATAATGGAATGAAGGTGGCAATCAAGAGGTCGAACCCGCAGTCAGAACAAGGGGTTAATGAATTCCAAACGGAAATTGAAATGCTTTCCAAGCTGAGACACAAGCATTTGGTGTCCTTGATTGGGTTCTGCGATGACAATGATGAGATGTATAATGTTGAAGGTGGTTCAACTCACGCTGCCCGTGTTGAGGAAAGTGAGTTTGAAGAAATAAGCTTGGGAGACAACGACATAGCACGCCACTATAAAAACTTGAGCCTTGGAAGTGAGCATGGCCTTAGCAACGATTCCAGTGAGAATCCGACTGCCATCTTCTCACAACTTGTCAATCCAAAAGGACGATGA 1965 0.4651 MHSGAKGVLLSLVCTLVLLNGIHAASNEEPGSLFLGCGLDEGGAKDADGRQWSPDNKFLGSAGDSITSKASHQDPSLMSEVPYMSARVFKSETTYKVPVKPDNRYWLRLHFYPSLYGSFDPSKSYFSVTANGVTLLTNFSASITCEALSQAYIDREYSLAPLNSDTLTLTFKPSDTYDGAFAFVNGIQLIQMPELFQSAVMVGYAERTMDVRSLNLQTMFRLNVGGQYISPTQDSGLTRMWYDDTPYLYGAAAGVTNQAEKNVSIDYQTMPQYIAPPDVYSTSRSMGKDKDVNMGYNLTWIFRVDPNSMYLARLHFCDYHYSKVNEIVFDIFVNNQTAEAQADVIGWTRGKGVPTYKDYMIYVQDGEGDEQLWLALHPAPESKPEYYDAILNGVEIFKLNDTNLSGPNPQLSDMLLKQHEEEEGFSDQKAYNKHAVIGGAAGGAAGVAFMAVICVAVYNKKKRVPGSEGGYSSWLPIYLNSRGSKSTTSGKSVSSATLSTMAQGLCRYFSLQEMKHATKNFDESNVIGVGGFGKVYKGVIDNGMKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCDDNDEMYNVEGGSTHAARVEESEFEEISLGDNDIARHYKNLSLGSEHGLSNDSSENPTAIFSQLVNPKGR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0250 654 MobiDBLite consensus disorder prediction 631 647 - -
Ssu4g0250 654 PANTHER OS07G0166700 PROTEIN 592 638 IPR045272 GO:0004714|GO:0006468
Ssu4g0250 654 Gene3D - 214 400 - -
Ssu4g0250 654 Gene3D - 34 193 - -
Ssu4g0250 654 Pfam Protein kinase domain 522 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0250 654 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 591 - -
Ssu4g0250 654 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 592 638 - -
Ssu4g0250 654 MobiDBLite consensus disorder prediction 631 654 - -
Ssu4g0250 654 Pfam Malectin-like domain 36 398 IPR024788 -
Ssu4g0250 654 Gene3D Phosphorylase Kinase; domain 1 481 593 - -
Ssu4g0250 654 SUPERFAMILY Protein kinase-like (PK-like) 495 592 IPR011009 -
Ssu4g0250 654 PANTHER OS07G0166700 PROTEIN 20 591 IPR045272 GO:0004714|GO:0006468
Ssu4g0250 654 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Ssu4g0250 654 ProSiteProfiles Protein kinase domain profile. 521 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0250 Ssu-Chr4 4064378 4066972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0250 22 590 Receptor kinase-like Gene Family AT3G51550 47.611 2.48e-164 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu4g0250 Malectin_like 5.9e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0250 - - gmx:102659961 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0250 4 4064378 4066972 Ssu7g1601 7 33538191 33540779 PCT